Culture

Over half a million corals destroyed by port of Miami dredging, study finds

image: Seawhips near the Port of Miami dredging site in 7 centimeters of sediment.

Image: 
Miami Waterkeeper

MIAMI--A team of researchers including scientists at the University of Miami (UM) Rosenstiel School of Marine and Atmospheric Science, published new findings that reveal significant damage to Miami's coral reefs from the 16-month dredging operation at the Port of Miami that began in 2013. The study found that sediment buried between half to 90 percent of nearby reefs, resulting in widespread coral death.

The results, published in the journal Marine Pollution Bulletin, estimate that over half a million corals were killed within 550 yards (500 meters) of the dredged channel, and that dredging impacts may have spread across more than 15 miles (25 kilometers) of Florida's reef tract.

"Coral reefs worldwide are facing severe declines from climate change," said Andrew Baker, associate professor of marine biology and ecology at the UM Rosenstiel School and senior author of the study. "If we want to conserve these ecosystems for the generations that come after us, it's essential that we do all we can to conserve the corals we still have left. These climate survivors may hold the key to understanding how some corals can survive global changes. We have to start locally by doing all we can to protect our remaining corals from impacts, like dredging, that we have the ability to control or prevent."

The researchers reanalyzed data originally collected by consultants as part of the dredge's environmental monitoring program. This program had attributed most of the documented coral losses in the area to a region-wide outbreak of coral disease that occurred at the same time. The new study controlled for these impacts by looking at losses of coral species that were not susceptible to the disease and by testing whether corals closer to the dredge site were more likely to die during the dredge period than those further away. The new analysis revealed that most of the documented coral losses near the Port of Miami were in fact the result of dredging.

"It was important to differentiate these multiple impacts occurring on the reefs to understand the direct effects of dredging specifically," said lead author Ross Cunning, who began the project while a postdoctoral scientist at the UM Rosenstiel School and is now a research biologist at the Shedd Aquarium in Chicago. "We brought together all the available data from satellites, sediment traps, and hundreds of underwater surveys. Together, the multiple, independent datasets clearly show that dredging caused the major damages observed on these reefs."

Florida's reef tract is the only nearshore reef in the continental United States, and coral cover has declined by at least 70 percent since the 1970's. Staghorn corals, which were once common in shallow water, have declined an estimated 98 percent and are now threatened species under the Endangered Species Act. The affected areas adjacent to the dredge site are of high conservation value and have been designated as "critical habitat" for the recovery of these threatened staghorn corals. Nationwide, coral reefs provide over $1.8 billion in flood risk reduction annually.

The researchers also studied whether sediment plumes - milky clouds of suspended dredging sediment visible from space - could predict impacts observed on the reefs below. The authors found that plumes detected using satellites had a remarkably high correlation with impacts documented on the seafloor. This is the first study to show that satellite data can be reliably used to predict dredging impacts on corals and their habitats.

"This connection allowed us to predict impacts beyond where ship-based monitoring was taking place, and showed that dredging likely damaged this reef several kilometers away," said study co-author Brian Barnes of the University of South Florida. "While this same relationship may not apply in all projects, this is a remarkable finding that further establishes Earth-observing satellites as independent monitoring tools to fill in gaps where data are otherwise not available."

"This study provides a clear and scientifically robust estimate of the impact of this dredging project on Miami's coral reef resources. It tells a devastating story of loss that we cannot afford to ignore any longer," said Rachel Silverstein, executive director and waterkeeper of Miami Waterkeeper and a co-author of the study. "We hope that these findings will provide valuable information to guide restoration of the impacted reefs and prevent these kinds of impacts in the future."

The study, titled "Extensive coral mortality and critical habitat loss following dredging and their association with remotely-sensed sediment plumes," was published in the August 2019 online issue of the journal Marine Pollution Bulletin.

Credit: 
University of Miami Rosenstiel School of Marine, Atmospheric, and Earth Science

UCI research helps shed new light on circadian clocks

Irvine, Calif., May 30, 2019 - Can your liver sense when you're staring at a television screen or cellphone late at night? Apparently so, and when such activity is detected, the organ can throw your circadian rhythms out of whack, leaving you more susceptible to health problems.

That's one of the takeaways from two new studies by University of California, Irvine scientists working in collaboration with the Institute for Research in Biomedicine in Barcelona, Spain.

The studies, published today in the journal Cell, used specially bred mice to analyze the network of internal clocks that regulate metabolism. Although researchers had suspected that the body's various circadian clocks could operate independently from the central clock in the hypothalamus of the brain, there was previously no way to test the theory, said Paolo Sassone-Corsi, director of UCI's Center for Epigenetics and Metabolism and senior author of one of the studies.

To overcome that obstacle, scientists figured out how to disable the entire circadian system of the mice, then jump-start individual clocks. For the experiments reported in the Cell papers, they activated clocks inside the liver or skin.

"The results were quite surprising," said Sassone-Corsi, Donald Bren Professor of Biological Chemistry. "No one realized that the liver or skin could be so directly affected by light."

For example, despite the shutdown of all other body clocks, including the central brain clock, the liver knew what time it was, responded to light changes as day shifted to night and maintained critical functions, such as preparing to digest food at mealtime and converting glucose to energy.

Somehow, the liver's circadian clock was able to detect light, presumably via signals from other organs. Only when the mice were subjected to constant darkness did the liver's clock stop functioning.

In upcoming studies, UCI and Barcelona researchers will phase in other internal clocks to see how different organs communicate with each other, Sassone-Corsi said.

"The future implications of our findings are vast," he noted. "With these mice, we can now begin deciphering the metabolic pathways that control our circadian rhythms, aging processes and general well-being."

In earlier studies, Sassone-Corsi has examined how circadian clocks can be rewired by such factors as sleep deprivation, diet and exercise. Exposure to computer, television or cellphone light just before bed can also scramble internal clocks.

Because of modern lifestyles, it's easy for people's circadian systems to get confused, he said. In turn, that can lead to depression, allergies, premature aging, cancer and other health problems. Further mice experiments could uncover ways to make human internal clocks "less misaligned," Sassone-Corsi added.

Credit: 
University of California - Irvine

Scientists identify a novel strategy to fight viral infections and cancer in animal model

WINSTON-SALEM, N.C. - May 30, 2019 - A potential therapeutic strategy to treat viral infection and boost immunity against cancer is reported in the May 30 online issue of the journal Cell.

The work, conducted by scientists at Wake Forest School of Medicine, found that boosting the body's production of type 1 interferon helped clear viral infection and increased immunity against cancer by identifying a sensor involved in suppressing interferon production in an animal model.

Interferons are a group of signaling proteins made and released by host cells in response to the presence of several viruses. In a typical scenario, a virus-infected cell will release interferons causing nearby cells to heighten their anti-viral defenses.

Interferons also help the immune system fight cancer and may slow the growth of cancer cells.

The principal investigator of the study was Hui-Kuan Lin, Ph.D., professor of cancer biology at Wake Forest School of Medicine, part of Wake Forest Baptist Health.

In the study, Lin's team discovered that RIG-I-like receptors (RLR) mediated interferon (IFN) production, which played a pivotal role in elevating host immunity for viral clearance and cancer immune surveillance. They reported that glycolysis, the first step in breaking down glucose to extract energy for cellular metabolism, was inactivated during RLR activity. That inactivation served as the key to turn on type I IFN production.

Using pharmacological and genetic approaches, the scientists showed that lactate reduction by lactate dehydrogenase A (LDHA) inactivation heightened type I IFN production to protect from viral infection in mice.

The study established a critical role of glycolysis-derived lactate in limiting RLR signaling and identified MAVS as a direct sensor of lactate, which functions to connect energy metabolism and innate immunity, Lin said.

Type I interferons (IFNs), produced by almost all type of cells, played a vital role in host defense against viral infection and cancer immunosurveillance, Lin said.

Lin's team plans to conduct additional studies in other animal models in preparation for potential clinical trials.

Credit: 
Atrium Health Wake Forest Baptist

LSU health research finds new RX target for common STD

image: Dr. Ashok Aiyar

Image: 
LSU Health New Orleans

New Orleans, LA - Research led by Ashok Aiyar, PhD, Associate Professor of Microbiology, Immunology and Parasitology at LSU Health New Orleans School of Medicine, has identified a target that may lead to the development of new treatments for the most common sexually transmitted infection in the US. The results are published this month online in PNAS, available here.

Chlamydia is caused by infection with Chlamydia trachomatis bacteria. It can affect both the urogenital tract and the eyes. If untreated, the outcome of both ocular and genital infections can be severe. Ocular Chlamydia infections are the leading cause of infectious blindness, and genital infections can lead to infertility. The health of infants born vaginally to infected mothers is also often severely compromised.

Chlamydia trachomatis bacteria need the essential amino acid, tryptophan, to survive. They are dependent upon their host cells, or the microbiome, to provide it. Genital Chlamydia strains have a unique mechanism to avoid tryptophan starvation. By conditionally making an enzyme called tryptophan synthase, they can use a molecule called indole, which is sometimes made by the genital microbiome, to make tryptophan. Ocular strains make an inactive version of tryptophan synthase or have lost the gene for the enzyme entirely. The goal of this research was to discover why ocular Chlamydia no longer make an active tryptophan synthase.

Dr. Aiyar says, "Our studies demonstrate that small molecules, collectively called trp operon de-repressors, which are produced by the gut microbiome and carried by the circulation to other parts of the body, play a key role. These molecules force Chlamydia to make tryptophan synthase. However, activation of tryptophan synthase in the absence of indole generates ammonia, which kills Chlamydia very rapidly. As such, our findings provide new leads for therapeutics against chlamydia infections that leverage products made by the gut microbiome."

Previous studies have shown that trp de-repressors also kill other pathogenic bacteria, such as Legionella pneumophila and Mycobacterium tuberculosis, via unknown mechanisms.

"It is possible that the mechanism we have described for Chlamydia extends to these other bacteria as well," notes Aiyar.

According to the Centers for Disease Control and Prevention (CDC), Louisiana had one of the highest rates of reported cases of Chlamydia trachomatis in the United States in 2017. The CDC reported there were more than 1.7 million cases of chlamydia diagnosed in 2017, representing a 22% increase from 2013 levels. However, the CDC estimates that 2.86 million infections occur annually. A large number of cases are not reported because most people with chlamydia are asymptomatic and do not seek testing.

Next steps include research on the mechanisms to restrict the availability of indole in cells in the genital area, thereby creating conditions under which trp de-repressors will effectively kill genital Chlamydia by forcing the production of ammonia.

Credit: 
Louisiana State University Health Sciences Center

Scientists engineer unique 'glowing' protein

image: Petri dish with bacteria genetically modified to produce a fluorescent protein. The glowing symbol is a logo of the Moscow Institute of Physics and Technology.

Image: 
Vera Nazarenko <em>et al</em>.

Biophysicists from the Moscow Institute of Physics and Technology have joined forces with colleagues from France and Germany to create a new fluorescent protein. Besides glowing when irradiated with ultraviolet and blue light, it is exceedingly small and stable under high temperatures. The authors of the paper, published in the journal Photochemical & Photobiological Sciences, believe the protein holds prospects for fluorescence microscopy. This technique is used in research on cancer, infectious diseases, and organ development, among other things.

Fluorescence microscopy is a method for studying living tissue that relies on induced luminescence. After being exposed to laser radiation at a particular wavelength, some proteins emit light at a different wavelength. This induced "glow" can be analyzed using a special microscope. Researchers append such fluorescent proteins to other proteins via genetic engineering to make the latter ones visible to the microscope and observe their behavior in cells. Fluorescence microscopy proved so scientifically valuable that one Nobel Prize was awarded for its discovery, followed by another one for radically improving the method's accuracy.

Up until now, the fluorescent proteins used for such observations had several flaws. They were vulnerable to heat, fairly bulky, and only glowed in the presence of oxygen.

"For one thing, our protein is more thermostable than its analogues: It only denaturates at 68 degrees Celsius," said the paper's lead author Vera Nazarenko from the MIPT Laboratory of Structural Analysis and Engineering of Membrane Systems. "It is also miniature, while most of the currently used fluorescent proteins are rather bulky. On top of that, it can emit light in the absence of oxygen."

The team originally identified the protein with these remarkable properties in the cells of a the thermophilic bacterium -- that is, one which lives in high-temperature environments, such as hot springs. The researchers then genetically engineered a DNA sequence that reproduced the protein's fluorescent segment but not the other parts, which would make the molecule larger.

By introducing the gene that encodes the protein into the cells of another bacterium, Escherichia coli, the team turned it into a factory mass-producing the fluorescent protein with unique properties.

Researchers studying the processes that occur in living cells have been waiting for a protein combining these crucial features for a long time. By introducing it into cells, they can now obtain essential data on cell life and death. To name a few applications, fluorescence microscopy is seen as one of the best tools for investigating the mechanism behind malignant tumor genesis and development. It is also useful for research on cell signaling and organ development.

The proteins previously used in fluorescence microscopy were bulky and thermally unstable, putting limitations on the method. Thanks to the MIPT team, that obstacle has been eliminated.

Credit: 
Moscow Institute of Physics and Technology

Bacteria's protein quality control agent offers insight into origins of life

image: An incompletely built protein fragment remains attached to a tRNA molecule (red) within an obstructed bacterial large ribosomal sub-unit (light blue). The bacterial version of Rqc2 detects the jammed ribosome (Dark blue).

Image: 
Helge Paternoga, Joazeiro laboratory.

JUPITER, Fla.--May 30--Our cells' process for transforming genes into useful proteins works much like an automobile factory's assembly line; there are schematics, parts, workers, motors, quality control systems and even recycling crews. If the cell's recycling process falters, abnormal protein fragments accumulate, potentially causing the cell's death. In nerve cells, the process is linked to a variety of neurodegenerative diseases, including ALS and dementia.

A new study from the lab of Claudio Joazeiro, PhD, published on line in the journal Cell on May 30, uncovers how simpler organisms--bacteria and archaea--manage the recycling of incomplete proteins. The discoveries not only offer new directions for fighting the virulence of some of humanity's most dangerous pathogens, including listeria, staph and streptococcus, they have implications for our understanding of how life itself evolved.

Joazeiro's group found the mechanism isn't so different from one they previously uncovered in plant, animal and fungal cells.

"We know that as cells are making proteins, this process is occasionally halted due to errors," says Joazeiro, who has joint appointments in the Scripps Research Department of Molecular Medicine in Jupiter, Florida, and the Center for Molecular Biology of Heidelberg University, in Germany.

"One of the problems with this is that the accumulation of partially formed proteins may be toxic. So in our lab, we're asking how do cells sense this, and how do they disassemble these proteins and recycle the building blocks?"

Organelles called ribosomes serve as the protein-assembly motors within cells. If they stall during the process of piecing together the parts--amino acids--cells have a variety of systems for responding. In human and other eukaryotic cells, when a ribosome jams, rescue factors split it open. A protein called Rqc2, also known as NEMF, zooms in and recruits another protein--the ubiquitin ligase Ltn1, also called listerin. The Joazeiro lab previously discovered that Ltn1 marks the truncated protein fragment on ribosomes with a destruction tag called ubiquitin. Protease saws then handle the demolition.

Underscoring the importance of this recycling process, Joazeiro discovered in 2009 that mutations in Ltn1 can cause the death of nerve cells in mice, resulting in ALS-like symptoms.
Bacteria have related, but somewhat more direct systems for addressing halted ribosomes and their protein fragments, according to the Cell report. Studying the bacterium B. subtilis, the Joazeiro team found that Rqc2 itself marks the protein fragment with a flag--a polymer made of the amino acid alanine. Thus flagged, proteases come to cut up the bad fragment.

Previous studies had suggested that in some pathogenic bacteria, Rqc2 proteins had a different job, one that functioned outside the cell, helping attach the microbes to hosts.

"We have found this is not the complete story," Joazeiro says. "Rqc2 plays a more fundamental role inside of bacterial cells."

The next step will be to find out whether the defective virulence of strep varieties lacking Rqc2 is primarily a consequence of their failure to recycle protein fragments inside the cell. As increasing varieties of pathogens develop multi-drug resistance to antibiotics, understanding bacterial virulence may prove especially necessary.

Equally important to Joazeiro is the realization that Rqc2 serves as a "living" molecular fossil, illuminating new insights about the ancient ancestral organism that emerged some 4 billion years ago to form the very base of the tree of life that evolved into the planet's biodiversity today.

"Shortly after cells invented how to make proteins, they were also faced with determining how to deal with incompletely made proteins," Joazeiro says. "The analyses suggest that an Rqc2 homolog in the last universal common ancestor already carried out this task."

Credit: 
Scripps Research Institute

Perceived discrimination associated with well-being in adults with poor vision

Bottom Line: This study of nearly 7,700 men and women 50 or older in England looked at how common perceived discrimination was among those with visual impairment and how that was associated with emotional well-being. Of the individuals, 913 reported poor overall eyesight and 658 reported poor eyesight up close. Discrimination was more commonly reported by those adults with poor eyesight than those with good eyesight, with the most common form of discrimination reported being treated with less respect or courtesy. Individuals who reported poor eyesight and discrimination were more likely to report depressive symptoms and loneliness, as well as lower quality of life and life satisfaction than those with poor eyesight but no reported perceived discrimination. A limitation of the study is that poor eyesight was self-reported. Health care practitioners should consider asking patients with visual impairment about their well-being.

Authors: Sarah E. Jackson, Ph.D., University College London, and coauthors

(doi:10.1001/jamaophthalmol.2019.1230)

Editor's Note: The article includes funding/support disclosures. Please see the article for additional information, including other authors, author contributions and affiliations, financial disclosures, funding and support, etc.

Credit: 
JAMA Network

Interaction with stromal cells influences tumor growth, metastasis in pancreatic cancer

A study from researchers at the Massachusetts General Hospital (MGH) Cancer Center has demonstrated how the response to pancreatic cancer cells of normal tissue - called the stroma - within tumors can influence the ability of individual cancer cells to proliferate and metastasize. Their report, which details how differences in the relative amounts of tumor cells and stromal cells alter patterns of gene expression within individual tumor cells, is being published in Cell and may lead to improved therapies for this difficult-to-treat cancer.

"Our finding that pancreatic cancer cells can behave differently based on the types of cells that are around them may explain why some cells respond to chemotherapy and radiation and some do not," says David Ting, MD, of the Tucker Gosnell Center for Gastrointestinal Malignancies in the MGH Cancer Center, co-senior author of the report. "We also identified a unique cell type that has the ability to replicate and to move at the same time, activates both the MAPK and STAT3 signaling pathways and is killed by combined use of MAPK and STAT3 inhibitors, suggesting a potential therapeutic strategy."

The stroma of pancreatic tumors largely consists of connective tissue cells called cancer-associated fibroblasts (CAFs), along with immune cells and endothelial cells. While some studies have suggested that pancreatic CAFs contribute to the growth and spread of cancer, others have found that reducing CAFs led to more aggressive tumor behavior. These findings, along with the variability of stromal content within pancreatic tumors, suggested that interactions between CAFs and tumor cells are complex.

Recent studies by the MGH team found significant differences in gene expression between pancreatic cancer cells in the primary tumor and those circulating in the bloodstream, with some expressing signatures indicating proliferative features and others more metastatic potential. Subpopulations of cancers cells at the interface between tumor and stroma also expressed these differing genetic signatures, suggesting that they might be influenced by CAFs in the stroma.

The team's current experiments revealed that:

Culturing pancreatic tumor cells (PDACs) with CAFs led to changes in gene expression within cancer cells based on the relative proportions of the two types of cells within the culture. These differences allowed PDACs to be grouped into classes expressing either proliferative or metastatic/invasive signatures, and a subpopulation of "double-positive" cells simultaneously expressing both signatures was primarily seen in cultures with the highest proportion of CAFs.

Tumors with different PDAC:CAF ratios implanted into immunodeficient mice led to changes in tumor growth and the distant spread of tumor cells, implying that stromal differences modulate the gene signatures and the proliferative and metastatic capabilities of pancreatic cancer cells.

CAFs activate the MAPK and STAT3 signaling pathways in double-positive pancreatic cancer cells, and inhibitors of those pathways were more effective in cultures with high proportions of CAFs, with the greatest effects being produced by combining inhibitors of both pathways.

Secretion of TGF-β by CAFs was found to drive the generation of double-positive PDACs, which provides a rationale for therapeutic agents that target TGF-β.

Discrete tumor "glands," comprised of clusters of PDACs, were more useful in predicting treatment outcomes than were individual cells, with glands consisting primarily of double-positive and metastatic/invasive cells associated with treatment resistance and poor patient survival. The prevalence of specific types of PDACs within tumor glands was influenced by the proportions of stromal to tumor cells within glands.

"The assay we developed to identify these different tumor glands provides a strategy to use it as a biomarker to select personalize therapy based on the response of normal cells to the cancer," says Ting, who is an assistant professor of Medicine at Harvard Medical School. "The identification of the roles of both MAPK and STAT3 signaling in generating the different classes of PDACs and the role of CAF-secreted TGF-β in that signaling suggests the importance of investigating how different stromal compositions may determine the optimal drug combinations."

Credit: 
Massachusetts General Hospital

Researchers restore beta-cell function by deleting old cells

video: Cristina Aguayo-Mazzucato, MD, PhD, explains her research into the application of senolysis to the rejuvenation of beta-cell function in type 2 diabetes.

Image: 
Joslin Communications Office

BOSTON - (May 30, 2019) --Research from Joslin Diabetes Center has shown in mice that insulin resistance increases the proportion of aged beta-cells which are dysfunction. Such an increase in aged beta-cells could lead to type 2 diabetes. These researchers confirmed similarly increased proportion of aged beta-cells in islets recovered from humans with type 2 diabetes. The study also showed that beta cell function can be recovered by removing these aged populations either via genetic modification or oral medication.

"Our hypothesis was that there was an important component in the development of diabetes which consisted of accelerated aging of beta-cells and that this population could be targeted therapeutically," says Cristina Aguayo-Mazzucato, MD, PhD, Assistant Investigator in the Section on Islet Cell and Regenerative Biology, first author on the paper, recently published in Cell Metabolism.

This research falls into a broader field of the study of senescence. Senescence is the slow decline of proliferation and function of a specific cell population. These cells accumulate as organisms grow older, but certain circumstances can cause some cells in an organism to age faster than the whole.

The research team, led by Dr. Aguayo-Mazzucato, generated animal models of insulin resistance and tracked the proportion of senescent beta-cells.

"What we found is that indeed, insulin resistance was increasing the amount of senescent or old beta-cells," she says.

Next, they deleted the aged cells through either genetic manipulation or medications that are known to remove senescent cells. The results were striking.

"We were able to recover beta cell function, we were able to restore glucose tolerance," says Dr. Aguayo-Mazzucato

The ability to restore beta cell function with minimal intervention could be a game changer in the care of type 2 diabetes. For many people with the disease, beta cell function declines to the point where they need injectable insulin. Should this research be borne out in clinic trials, the implications for treatment could be huge.

"When you look at the absolute percentage or quantity of the senescent beta-cells, they rarely exceed 20 percent of the whole beta cell population and yet targeting this relatively minor population had a huge effect on function and glucose metabolism and cellular identity," she says.

Medications to delete senescent cells , termed senolytics, are still under investigation. Dr. Aguayo-Mazzucato and her team hope to bring a potential treatment closer to the clinic by partnering with companies that are already working on senolytics, to test if their medications would work for people with diabetes.

"This opens a new target to treat diabetes which is basically to target populations of old or senescent cells that are really contributing to the local disfunction," she says.

Senolysis, or the removal of aged or dysfunctional cells, is a growing field in the treatment of age-related diseases. This new research fits into the larger picture of how senolytics could help combat many different diseases of aging, leading to better quality of life.

"In fact, it's a very exciting and rapidly growing field in medicine, which is called Senolytics or Senolysis," says Dr. Aguayo-Mazzucato. "It has promises, as shown by other laboratories, in osteoarthritis, muscle frailty or degeneration, renal function, some brain function."

While the work was completed in models of type 2 diabetes, the findings could also be relevant in type 1 diabetes.

"What we're seeing is that senescence is, in reality, a response to stress. In the case of type two diabetes, this stress is insulin resistance. In the case of type one diabetes, it is the immune attack on beta-cells," she says. "But in both models, beta-cells are responding to these stresses by becoming senescent. So, we think that the potential of this new vision of preventing diabetes will be valid for both type one and type two."

Credit: 
Joslin Diabetes Center

Stellenbosch University researchers study resistance to 'protect' anti-TB drug

In July last year, South Africa became the first country to roll out a new anti-tuberculosis drug in its national programme.

This new drug, called bedaquiline, is the first new anti-tuberculosis drug to be developed in four decades. It improves the survival of patients with multidrug resistant TB, potentially offering a shorter treatment time with fewer side effects.

Scientists from Stellenbosch University (SU), in collaboration with a multidisciplinary team of researchers and clinicians, are now trying to conserve this life-saving treatment by studying how Mycobacterium tuberculosis, the bacterium that causes TB, can develop resistance to this drug. Their findings will be used to inform tuberculosis treatment guidelines to ensure that the right combination of anti-tuberculosis drugs are used along with bedaquiline in order to optimise patient treatment outcomes, while minimising the risk of developing resistance to the drug.

"We need to protect bedaquiline from the development of resistance and therefore it is crucial to understand how quickly and through which mechanisms bedaquiline resistance develops," says Dr Margaretha de Vos, one of the lead authors of a scientific commentary article recently published in the New England Journal of Medicine. The article is based on research by De Vos and colleagues at the Division of Molecular Biology and Human Genetics at SU's Faculty of Medicine and Health Sciences (FMHS).

SU researchers studied the development of bedaquiline resistance in TB bacteria in a 65-year-old patient from Cape Town using a combination of novel techniques. These included (1) whole-genome sequencing of the bacteria in patient samples taken throughout various stages of the disease, (2) targeted deep sequencing of Rv0678, a gene of the bacteria that is associated with bedaquiline resistance, and (3) culture-based drug susceptibility testing.

The study showed that resistance to bedaquiline emerged despite the patient adhering to the standard treatment regimen, which requires bedaquiline to be taken along with at least five antibiotic drugs which the bacterium does not resist.

"These results show that it is crucial to increase our efforts to monitor patients receiving bedaquiline and to develop new diagnostic tools to rapidly identify bedaquiline resistance. By rapidly identifying bedaquiline resistance, we will be able change treatment and thereby prevent spread," says Rob Warren, distinguished professor in microbiology and co-author of the article.

Helen Cox, one of the senior co-authors of the study, suggests that "while it is important to monitor the emergence of resistance to new drugs such as bedaquiline, these data should not suggest that we restrict access to bedaquiline for the thousands of patients in South Africa who are in dire need of improved treatment for drug-resistant tuberculosis".

Credit: 
Stellenbosch University

Discovery may lead to natural ent-kaurane diterpenoid for NK-based tumor immunotherapy

image: Graphical Abstract

Image: 
KIB

As early responders in the surveillance of malignant cells, natural killer (NK) cells play a significant role in the control of transformed cells at the tumor initiation stage through direct cytolysis. For this reason, NK cell-based immunotherapy is a potential therapeutic strategy for tumor sufferers.

Research groups led by Prof. LI Yan and Prof. Puno Pematenzin from the Kunming Institute of Botany of the Chinese Academy of Sciences found that ent-kaurane diterpenoids, which show a wide range of bioactivity, especially antitumor activity, are good candidates as sensitizer agents for NK cells.

Their work revealed the immunomodulatory role of ent-kaurane diterpenoids toward NK cells for the first time.

The research data not only suggest Prxs-I/II as a promising therapeutic target for cancer immunotherapy, but also provide a compelling rationale for further development of the inhibitor PAA as a sensitizer agent for NK cell-mediated HCC immunotherapy.

The study, entitled "Parvifoline AA Promotes Susceptibility of Hepatocarcinoma to Natural Killer Cell-mediated Cytolysis by Targeting Peroxiredoxin,'' was published online in Cell Chemical Biology.

The results show that the natural ent-kaurane diterpenoid parvifoline AA (PAA) markedly stimulates the expression of NKG2D ligands on hepatocellular carcinoma (HCC) cells, considerably enhancing their recognition and lysis by NK cells.

It involves the covalent binding of PAA to the conserved cysteine site of peroxiredoxins I/II (Prxs-I/II). This binding inhibits the catalytic activity of Prxs-I/II, thus activating the Ros/ERK axis and the immunogenicity of HDD toward NK cells. Robust tumor growth inhibition by PAA dependent on NK cell activation was detected in vivo.

The research data not only suggest Prxs-I/II as a promising therapeutic target for cancer immunotherapy, but also provide a compelling rationale for further development of the inhibitor PAA as a sensitizer agent for NK cell-mediated HCC immunotherapy.

Credit: 
Chinese Academy of Sciences Headquarters

COMMD3/8 protein complex: a potential drug target for treating inflammatory diseases

image: The COMMD3/8 complex recruits GRK6 to chemoattractant receptors through a stepwise mechanism: (i) the C-terminal tail of the activated receptor is phosphorylated by GRK2 and GRK3. (ii) the COMMD3/8 complex is associated with the receptor tail through electrostatic interactions with the phosphorylated residues. (iii) GRK6 is recruited to the receptor through the interaction with the COMMD3/8 complex and phosphorylates the C-terminal tail.

Image: 
Osaka University

A team of researchers led by Kazuhiro Suzuki from the Immunology Frontier Research Center at Osaka University discovered the COMMD3/8 complex as a molecule involved in immune cell migration, clarifying that the complex plays a critical role in the establishment of immune responses. Their research results were published in The Journal of Experimental Medicine.

Immune cells are constantly moving around in our body. Immune cell migration, which is critically important for efficient immune responses when immune cells detect intrusion of pathogens, is also deeply involved in the development of inflammatory diseases such as autoimmune diseases. The factors in the induction of immune cell migration are chemokines and chemokine receptors. Chemokine receptors, a type of G protein-coupled receptor (GPCR), mediate signal transduction and are involved in various pathologies and conditions. A large fraction of existing drugs target various GPCRs.

While exploring the mechanism of regulating immune cell migration, this team identified a protein complex consisting of copper metabolism MURR1 domain-containing 3 (COMMD3) and COMMD8, or the COMMD3/8 complex, as an adaptor that selectively recruits a specific GPCR kinase (GRK) to chemoattractant receptors.

They found that COMMD3/8 promoted signal transduction of chemokine receptors to facilitate migration of immune cells, including lymphocytes. (Figure 1)

In experiments using COMMD3/8-deficient mice, impaired migration of activated B cells, also known as B lymphocytes, significantly reduced immune responses, causing severe defects in antibody response. In addition, they found that loss of the COMMD3/8 complex reduced lymphocyte migration induced by stimulation of chemokine receptors. They also found that the COMMD3/8 complex functioned as an adaptor that selectively recruits GRK6, a signal transduction molecule, to chemoattractant receptors, inducing activation of signaling of chemokine receptors. (Figure 2)

From these findings, they clarified that the COMMD3/8 complex played an essential role in lymphocyte migration and proper functioning of the immune system. In addition, they revealed that COMMD3 and COMMD8 were degraded by the proteasome in the absence of the other, and deficiency of either protein produced the same phenotypes, which indicates that both COMMD3 and COMMD8 are required for the stability and function of their complex.

The results of their study suggest that inhibiting the function of the COMMD3/8 complex will improve conditions of autoimmune disorders and inflammatory diseases caused by overwhelming immune response. The COMMD3/8 complex will become a drug target for curing these diseases.

"Although it took a long time for us to clarify how the COMMD3/8 complex activated signal transduction of chemokine receptors, our achievement is remarkable in that a signal regulation mechanism common in chemokine receptors and many GPCRs has been clarified," says lead author Akiko Nakai.

Credit: 
Osaka University

Uncovering microgel mysteries

video: HS-AFM movie of the phase image of the NB3 microgels in pure water during heating (from
~25 to ~40 °C; 60× speed).

Image: 
Nishizawa <em>et</em> <em>al</em>., <em>Angewandte</em> <em>Chemie International Edition</em>, 2019, Copyright Wiley-VCH Verlag GmbH & Co. KGaA

Researchers at Shinshu University successfully recorded previously unexplained behavior of hydrogel microspheres (microgels) using a newly customized tool: the temperature-controlled high-speed atomic force microscopy (TC HS AFM). This machine, which is the only one in the world, had been assembled by Dr. Takayuki Uchihashi of Nagoya University to investigate proteins. It was applied for the first time to the study of microgels by the team at Daisuke Suzuki Laboratory, Graduate School of Textile Science & Technology and RISM (Research Initiative for Supra-Materials) of Shinshu University. The study lead by first year doctoral candidate, Yuichiro Nishizawa, succeeded in observing the structure of the microgels which had been difficult due to limitations of previous equipment.

The structure of microgels has been studied extensively using scattering and imaging techniques including electron microscopy, fluorescence microscopy, atomic force microscopy, super-resolution microscopy. The thermoresponsive properties of the core-shell structures had been well documented using such techniques. Using TC HS AFM, they were able to observe and record the particles in detail, non-thermoresponsive inhomogeneous decanano-scale spherical domains, which had been hypothesized by Dr. Kenji Urayama of the Kyoto Institute of Technology.

Nishizawa states, "as our research indicated, hydrogel microspheres have heterogeneous structure in almost every case. Moreover, the heterogeneous nano structure would have an impact on the physicochemical properties of water swollen microgels and would lead to a gap between theory and result. We believe that our findings can contribute to the understanding of these gaps."

The Shinshu University team first studied the microgels synthesized by precipitation polymerization. This gel has the core-shell structure, as well as the non-thermoresponsive spherical domains. Using inverse miniemulsion polymerization techniques, they were able to produce two more types of microgels previously thought to all be the same, but was observed to behave differently.

Microgels made by inverse miniemulsion polymerization below the VPTT produced a gel that did not have the non-thermoresponsive domain, nor did it have the classic core-shell structure. It was uniformly homogenous. A third method, using the inverse miniemulsion polymerization above the VPTT produced an inhomogeonous gel with no core-shell structure, but with the nano- to submicron-sized non-thermoresponsive domains. The Shinshu team were able to show that the method of production greatly effects the differences in the structure and therefore behavior of the three types of microgels.

This study provides insight into all thermoresponsive microgels and perhaps other stimuli-responsive colloids. The knowledge that the method of production has a strong effect on the structure will help develop real world applications such as microgel glass/crystal and other medical materials. The Shinshu team hope to continue the study of hydrogel microspheres. Nishizawa says, "ultimately, we want to develop new types of microspheres which improve people's standard of living."

Credit: 
Shinshu University

Brain activity in teens predicts future mood health

Philadelphia, May 30, 2019 - An imbalance of functioning in attention-related brain systems may help forecast the course of teen depression, according to a study published in Biological Psychiatry: Cognitive Neuroscience and Neuroimaging, published by Elsevier. Proper coordination of frontoinsular brain networks help us regulate our attention between external goals and self-focused or emotional thinking. But abnormalities in the coordination between these networks were not only evident in teens with more severe depression, but also, critically, predicted increased depressive symptoms two weeks later.

"The teen years are a time of remarkable growth and opportunity, as young people forge new relationships, learn how to navigate intense emotions, and make the transition to independence. However, it is also during adolescence that a high and growing number of teens experience clinical depression and related mood problems for the first time," said first author Roselinde Kaiser, PhD, University of Colorado Boulder.

"Our challenge as clinicians, scientists, and parents, is: how do we predict which teens will experience mood problems in the near future?".

Dr. Kaiser and colleagues tested the idea of using fMRI to predict future mood health. They measured the activity of frontoinsular networks while adolescents played a difficult computer game involving emotional images. Current prediction tools mostly use self-report, which can be unreliable in teens.

"Our results showed that adolescents who showed imbalanced coordination across brain systems--that is, lower coordination among areas involved in goal-directed attention, and higher coordination among areas involved in self-focused thought--went on to report bigger increases in depression two weeks later, bigger mood swings, and higher intensity of negative mood in daily life," said Dr. Kaiser.

Network functioning provided a better prediction of future mood health beyond current symptoms--a critical distinction, the authors wrote, as it suggests that frontoinsular network functioning could predict who might develop more severe depression between two teens with the same current symptoms.

"This very interesting study highlights the important role that frontoinsular circuits, measured using fMRI during the processing of emotional stimuli, may play in regulating our mood, and how impairment in the function of this network may underlie present and ongoing negative mood states," said Cameron Carter, MD, Editor of Biological Psychiatry: Cognitive Neuroscience and Neuroimaging.

Although the study assessed mood health at only two weeks later, the findings indicate that frontoinsular network functioning may be useful to predict future mood health in teens. If confirmed in longer clinical studies, the findings suggest that this measure could provide a neurobiological risk predictor to help guide interventions to prevent severe depression.

Credit: 
Elsevier

Providing a critical roadmap to bridge the gap between medicine and public health

Academic medical centers across the country and around the world are rapidly creating and expanding population health departments to bridge the worlds of clinical practice and public health. However, few frameworks exist to guide these efforts. Now a new case study from a pioneering leader in the field provides an important and definitive road map.

The report -- published by the Department of Population Health at NYU School of Medicine in the June 2019 issue of Academic Medicine -- includes four core approaches to improving health and reducing health inequities:

Engaging community partners to ensure that research goals and activities align with real-world priorities

Turning information into insight through rigorous analysis of data from diverse sources

Transforming healthcare to bridge the divide between research and clinical operations

Shaping policy by expanding the evidence base for and evaluating policies that advance population health

"While departments of Population Health are emerging independently at multiple institutions across the country, they share a number of core goals," says Marc N. Gourevitch, MD, MPH , the Muriel G. and George W. Singer Professor and chair of the Department of Population Health at NYU School of Medicine, and co-author of the case study. "We offer an approach for academic medical centers to promote health across the domains of research, education, and practice."

Launched in 2012, the Department of Population Health at NYU School of Medicine was one of the first departments of its kind in the country -- and now the largest, with nearly 100 full-time faculty and 350 staff. Its roster of interdisciplinary research encompasses numerous disciplines including community-engaged preventive health; mathematical modeling of health interventions; biomedical ethics, early childhood development; and healthcare delivery system improvements. Its faculty have published more than 2,000 peer-reviewed academic articles, and the Department has more than doubled its extramural funding, exceeding $49 million this year (of which 49 percent is from the National Institutes of Health).

A Record of Achievement

The report cites examples of successful initiatives that correspond to the four core approaches proposed as a framework for departments of population health:

Engaging community health workers from South Asian communities burdened by high rates of diabetes and hypertension to work with residents to prevent and manage diabetes, and from barbershops and churches in the African American community to promote colorectal screening among black men --the population most likely to die from colorectal cancer in the U.S.

Exploring the connection between the presence of specific communities of oral bacteria and the subsequent development of different cancers by applying novel computational approaches, and investigating whether or not modifiable behaviors such as smoking and consuming specific foods increase risk for developing these oral bacteria profiles

Supporting transformation of health care delivery from a volume- to a value-based approach by developing new models for improving and linking community-based, office-based, and hospital-based care through information technology, identifying high-risk populations, and evaluating the effectiveness of value-based care interventions.

Determining the influence of policies to alter the food environment on health outcomes such as childhood obesity, diabetes, and cancer

Gourevitch and Lorna Thorpe, PhD, MPH , professor of Population Health and director of the department's Division of Epidemiology -- and the case study's co-author - agree that Population Health departments face a number of common challenges. These include tensions in balancing priorities of research, practice, and evaluation; sustaining an integrated, interdisciplinary approach; and perhaps the largest hurdle, the lack of financial models that reward health care delivery systems for investing meaningfully in the health of geographic populations.

Despite these challenges, "academic medical centers and health systems across the country will increasingly endorse population health, not only to achieve the improved outcomes that come from addressing patients' social needs but also to harness resources and expertise in measuring the impact of novel approaches on the health of clinical populations and the communities in which they live," Thorpe says.

Gourevitch recently co-authored another study--along with eight other population health department chairs nationwide--describing the emergence and growth of the field in U.S. academic medicine in the journal JAMA Network Open . Key findings in that study also highlighted common elements and opportunities, and challenges across these new academic entities.

"Health systems achieve their missions most successfully when they partner with the communities they serve to create programs that meet defined needs," says Robert I. Grossman, MD, the Saul J. Farber Dean of NYU School of Medicine and CEO of NYU Langone Health. "In addition to providing outstanding clinical care, we foster broad-based investigation into what most benefits communities in sustaining good health and quality of life. Our Department of Population Health leads much of this effort."

Credit: 
NYU Langone Health / NYU Grossman School of Medicine