Culture

Scales offer insight into chronic stress of fish, University of Guelph research finds

image: This is professor Nicholas Bernier, Department of Integrative Biology.

Image: 
(University of Guelph)

For years, aquatic researchers have sought an easy way to determine when wild fish are under stress. Now University of Guelph researchers have shown for the first time that a key stress hormone, cortisol, accumulates in fish scales slowly and remains there for weeks.

The finding means measuring cortisol levels in scales could offer a simple, minimally invasive glimpse into fish well-being, allowing scientists to better understand how they are coping with agricultural, industrial or biodiversity changes.

Cortisol is a well-known stress indicator and appears readily in the blood. But blood tests are invasive and don't provide a good indication of long-term stress, because levels return to normal soon after a stressful event.

In new research published in the journal Conservation Physiology, professors Nicholas Bernier and Frédéric Laberge from U of G's Department of Integrative Biology demonstrate that cortisol accumulates in fish scales at a much slower rate than in blood and remains there for weeks.

"Recent research has found that cortisol can be measured in fish scales, but it wasn't able to demonstrate how long it took for the hormone to accumulate in the scales. This is important to know because the mere act of catching a fish will cause a cortisol spike. We are the first to show that cortisol increases slowly in scales and remains elevated for some time," said Laberge.

Much like human hair and fingernails, the scales of fish in the largest, most common fish group contain no live cells. But because scales grow within layers of the skin, they are in constant contact with the bodily fluids that keep them nourished, including circulating cortisol.

The research team wanted to better understand how long it took for cortisol to accumulate in scales after long-term stress and then dissipate after the stress ended. They conducted several experiments using goldfish in lab settings, exposing them to a variety of stressors over different time increments, and then allowing them to recover for one, two or three weeks. Blood and scale samples were taken throughout the stress and recovery periods.

The team found that blood levels of cortisol spiked within a half hour after exposure to a single stressor and then returned to normal within a few hours. While scale cortisol content did not change in response to a single incident of stress, repeated daily stress created a clear signature in the scales.

In fish that endured repeated stress over several weeks, their scale cortisol levels built up over time, taking at least 14 days to manifest in the scales, and then remained high, clearing from the scales slowly.

Even among the goldfish allowed to recover from their stress for more than three weeks, the cortisol levels in their scales were still high.

"One of the things we highlighted in our paper is that scales do not behave like hair and feathers," said Laberge. "With hair, cortisol is deposited as the hair grows and provides a retrospective look at stress levels. Scales are more dynamic. Hormones can accumulate and then dissipate in scales, but in a much slower way than in blood."

The team also learned that scales gathered from around the fish's horizontal midline showed the highest levels of cortisol, suggesting this area is best for sampling scales to measure this important hormone.

Although this research was conducted on goldfish in laboratory settings, the team has now begun similar research on wild fish in river settings to determine if adverse environmental conditions in natural settings increase scale cortisol levels.

The researchers expect scale cortisol accumulation and clearance will differ among fish species, just as the hormone accumulates differently in the hair of different mammal species.

"There is more work that needs to be done to understand these differences and also to make this testing method simpler, more precise and less invasive using as few scales as possible," said Bernier.

"This is still a new area of research, but there is a lot of excitement, both from ecological conservation researchers and from the animal welfare perspective, that scales have the potential to be a simple indicator of chronic stress."

Credit: 
University of Guelph

Your genes aren't the only factor dictating Alzheimer's risk, says Baycrest-U of T study

image: Dr. Ekaterina Rogaeva, researcher at the Tanz Centre for Research in Neurodegenerative Diseases.

Image: 
Provided by Baycrest

The colour of our eyes or the straightness of our hair is linked to our DNA, but the development of Alzheimer's disease isn't exclusively linked to genetics, suggest recently published findings.

In the first study published about Alzheimer's disease among identical triplets, researchers found that despite sharing the same DNA, two of the triplets developed Alzheimer's while one did not, according to recently published results in the journal Brain. The two triplets that developed Alzheimer's were diagnosed in their mid-70s.

"These findings show that your genetic code doesn't dictate whether you are guaranteed to develop Alzheimer's," says Dr. Morris Freedman, a senior author on the paper, head of neurology at Baycrest and scientist at Baycrest's Rotman Research Institute. "There is hope for people who have a strong family history of dementia since there are other factors, whether it's the environment or lifestyle, we don't know what it is, which could either protect against or accelerate dementia."

All three, 85-year-old siblings had hypertension, but the two with Alzheimer's had long-standing, obsessive-compulsive behaviour.

The research team analyzed the gene sequence and the biological age of the body's cells from blood that was taken from each of the triplets, as well as the children of one of the triplet's with Alzheimer's. Among the children, one developed early onset Alzheimer's disease at age 50 and the other did not report signs of dementia.

Based on the team's analysis, the late onset of the Alzheimer's among the triplets is likely connected to a specific gene linked to a higher risk of Alzheimer's disease, apolipoprotein E4 (otherwise known as APOE4), that the triplets were carrying. But researchers couldn't explain the early onset of Alzheimer's in the child.

The research team also discovered that although the triplets were octogenarians at the time of the study, the biological age of their cells was six to ten years younger than their chronological age. In contrast, one of the triplet's children, who developed early onset Alzheimer's, had a biological age that was nine years older than the chronological age. The other child, who did not have dementia, of the same triplet showed a biological age that was close to their actual age.

"The latest genetics research is finding that the DNA we die with isn't necessarily what we received as a baby, which could relate to why two of the triplets developed Alzheimer's and one didn't," says Dr. Ekaterina Rogaeva, another senior author on the paper and researcher at the University of Toronto's Tanz Centre for Research in Neurodegenerative Diseases. "As we age, our DNA ages with us and as a result, some cells could mutate and change over time."

In addition, there are other chemical factors or environmental factors that don't necessarily change the gene itself, but affect how these genes are expressed, adds Dr. Freedman, who is also a professor in the Division of Neurology, Department of Medicine, at the University of Toronto.

As next steps, researchers are interested in looking at special brain imaging of each family member to determine if there is an abundance of amyloid plaques, protein fragments that are typical signs of Alzheimer's. They are also looking to conduct more in-depth studies into the biological age of individuals with Alzheimer's to determine whether biological age affects the age of onset of the disease.

This work was made possible with support from the Canadian Consortium on Neurodegeneration in Aging, Ontario Neurodegenerative Disease Research Initiative, the Alzheimer Society of London and Middlesex, the Saul A. Silverman Family Foundation, the Morris Kerzner Memorial Fund, the Shanghai Pujiang Program and the National Institutes of Health.

With additional funding, researchers could further explore the interaction between genetics and environment in the development of Alzheimer's disease and the impact of environmental factors in delaying the onset of this disorder.

Credit: 
Baycrest Centre for Geriatric Care

Site search: A digital approach to proteins and cancer

image: Purdue University researchers developed software, called NmrLineGuru, to help scientists study specific information about proteins.

Image: 
Purdue University/Chao Feng

WEST LAFAYETTE, Ind. - What if scientists could create more effective drugs to treat cancers and other diseases by better targeting specific sites on proteins in the body?

That's the primary question researchers in the Purdue University laboratory of Carol Post, a distinguished professor in Purdue's College of Pharmacy, are trying to answer. They have developed software called NmrLineGuru to move researchers closer to the answer. Their work is published in the Nov. 5 edition of Scientific Reports.

Chao Feng, a postdoctoral researcher in Post's lab, who helped lead the research team, said, "We created software for fast 1D nuclear magnetic resonance lineshape simulation and analysis with multistate equilibrium binding models. It enables researchers and scientists to study much more specific information about proteins that are linked to serious diseases to help in the drug discovery process."

Proteins play a crucial role in the growth of cancer in the body by stimulating molecules responsible for tumor growth. The graphical user interface software developed at Purdue can help researchers quickly understand, through simulated models, how certain proteins bind with other molecules in the body.

"Our work stems from a deep understanding of the need in the drug discovery field for better and faster solutions to understand biological functions of proteins and molecules in the body," Feng said.

The Purdue software supports the most common two-, three-, and four-state binding models used in the drug discovery industry to study such interactions between the proteins involved in a disease state and the molecules that bind to them. The software takes the information submitted by the user and creates specific model information about protein interactions.

Credit: 
Purdue University

High school student publishes scientific paper with assistance from Texas Tech professor

Part of being classified as one of 86 public institutions in the Very High Research Activity (R1) category by the Carnegie Classification of Institutions of Higher Education means attracting some of the best and brightest researchers around the world to come to Texas Tech University.

That also means identifying and recruiting some of the top young research-oriented minds to come to campus as undergraduates or graduate students. Julia Kagiliery could be one of those.

Before she gets to college, however, the junior from Jacksonville, Florida, already is getting a taste of what it is like to be an accomplished, published researcher through her work with Texas Tech faculty member David Weindorf. Together, along with the help of other researchers across the U.S., they have published a paper in the International Journal of Coal Geology where they combined optical and X-ray methods to quantify lignite sulfur content in coal.

"It is absolutely amazing to be publishing so young," said Kagiliery, a 16-year-old honors student at the Episcopal School of Jacksonville. "I think young people are often dismissed because of their age in all fields of study. There is some sort of belief that young people, especially young women, are less qualified for projects like this.

"I am so thankful for all the people that helped me in this project, because they really believed in me. This is a really special thing for me, and it serves as a testament to the power of hard work and tenacity. Dr. Weindorf always says, 'You have greatness within you, know it, grow it, show it.'"

Weindorf, an associate vice president in the Office of Research & Innovation and a professor and BL Allen Endowed Chair of Pedology in the Department of Plant and Soil Science in the College of Agricultural Sciences & Natural Resources, saw Kagiliery's passion for research and her drive to succeed when she first reached out to him about a previous high school science project.

"My research team and I have been working with proximal-sensor application development for well over a decade," Weindorf said. "We are widely considered international authorities in such analysis. The lignite project has been one that I've had on my mind for several years, but I had never had the right opportunities develop to bring it to fruition.

"Truthfully, this type of research is highly novel."

As a sophomore, for her high school science fair, Kagiliery conducted a study on the phytoremediation of soil contaminated with motor oil by examining the sea oats that grow along the beach. It was a project inspired by her love of the beach and her recollection of the damage done to Florida's beaches in the wake of the 2010 Deepwater Horizon explosion and subsequent oil spill.

It was through this project that she connected with Weindorf, having read his paper on petroleum detection in Alabama in connection with the Deepwater Horizon spill. She flew to Lubbock to work with Weindorf and the visible near infrared (VisNIR) spectroscopy technique of proximal sensing.

It was during this time the two began discussing other sensors that could be used and other materials that could be tested. Given Weindorf's work in proximal sensor application and the lignite project that had yet to be developed, using the techniques on coal became the natural fit.

The project examined novel ways to determine the sulfur content of lignite coal, using VisNIR as well as portable X-ray fluorescence (PXRF) spectrometry and optical sensors such as NixPro, all of which are relatively new and display data in different ways, but that Weindorf says are rapidly gaining acceptance worldwide for a number of applications.

But before any lignite coal examination could be performed, the samples had to be gathered.

Weindorf contacted colleagues in North Dakota to gain access to active coal mines and began assembling a team of researchers to assist in the project, including plant and soil science doctoral candidate Autumn Acre and senior Cynthia Jordan.

Kagiliery and the others took samples from four different mines in North Dakota and collected 250 samples over a two-day period. Utilizing the laboratory of Eric C. Brevik at Dickinson State University in Dickinson, North Dakota, Kagiliery ground, dried, labeled and sub-sampled each sample, shipping a few grams of each sample to the lab of collaborator Nicholas Jelinski at the University of Minnesota and the rest to Weindorf's lab at Texas Tech.

A few weeks later, Kagiliery flew to Lubbock where she spent the next two days scanning every sample with the VisNIR, the NixPro and the PXRF, trying to discover which one, or which combination of methods, can best predict the sulfur content of the lignite coal.

In creating a model to determine sulfur content utilizing all the tools, Kagiliery used 75 percent of the samples to calibrate the model and the remaining 25 percent to check the model's accuracy. She worked side by side with Somsubhra Chakraborty of the Indian Institute of Technology-Kharagpur, one of Weindorf's closes collaborators, to evaluate several different statistical models for using the collected data.

From all the data gathered and analyzed, it was determined that a combination of the NixPro optical sensor and the PXRF data were the most successful in predicting the sulfur content of the lignite coal, at about 85 percent accuracy, better than either sensor by itself.

Accurately determining the sulfur content of coal has huge environmental impacts, as burning coal containing abundant sulfur creates sulfur dioxide, which leads to acid rain.

"In parts of the country with limited buffering capacity, this can quickly acidify soil, surface water, etc., causing substantive environmental damage," Weindorf said. "What our research has shown is that a field-portable, hand-held instrument has the capability to accurately measure the sulfur content in lignite coal. While our project was conducted in a laboratory to carefully control all variables for scientific study, the equipment used is field-portable and easily could be adapted for field use. Thus, the use of such technology in real time for rapid analysis of coal, in active mines, seems plausible."

Kagiliery will enter college in two years already with a leg up on her classmates - in fact, ahead of most of her peers in the U.S. She is a published scientific researcher.

This project appears to be just the beginning. She continues to collaborate with Weindorf on ideas for future projects by utilizing their versatility to examine problems both in the distance and close to home.

"I've always known that I wanted to go into science, but that goal has always felt so far away," Kagiliery said. "I never really put much thought into what being a scientist actually looked like. This experience has shown me what it's like to do real science, and that I don't have to wait until I've graduated to start making an impact.

"This certainly has shifted my career goals to be more research- and publication-based. It also has introduced me to a new field of science. I always knew I enjoyed chemistry and biology from my classes at school and textbooks, but I've found a recent love of environmental science. It's certainly opened my eyes to the depth and possibilities of my future."

As for where those possibilities might lie collegiately?

"My past teachers and Dr. Weindorf have taught me about the value of people in my education," Kagiliery said. "When I think about how I got to be the researcher and student that I am, I am struck by the people who have supported and encouraged me along the way. Dr. Weindorf has been one of the most influential people for me in that respect. I am looking forward to continuing my research, wherever it takes me, including Texas Tech. As a junior, I still have some time to consider my options, but Texas Tech is high on my list."

Credit: 
Texas Tech University

Modulation of proliferation factors in lung adenocarcinoma with an analysis of the transcriptional consequences of genomic EGFR activation

image: EGFR activated cases compared to pathway markers.

Image: 
Correspondence to - Melanie Haas Kucherlapati - mkucherlapati@partners.org

The cover for issue 65 of Oncotarget features Figure 7, "EGFR activated cases compared to pathway markers," by Kucherlapati, et al.

Molecular subtypes based on copy number, DNA methylation, and mRNA expression had variable proliferation levels, the highest correlating with decreased survival.

Significantly, results suggest EGFR over expression and activation are early alterations that likely stall the replication complex through PCNA phosphorylation creating replication stress responsible for DNA damage response and further mutation, but does not promote increased proliferation itself.

Dr. Melanie Haas Kucherlapati from the Department of Genetics at Harvard Medical School in Boston, Massachusetts, USA as well as the Department of Medicine, Division of Genetics at Brigham and Women's Hospital in Boston, Massachusetts, USA said, "It is well established that cancer is the result of accumulated genetic changes to tumor suppressor genes or oncogenes, and that these changes lead to uncontrolled cellular proliferation."

This study focuses on genomic and transcriptional changes to proliferation genes across a LUAD cohort created by The Cancer Genome Atlas, previously subtyped by them on the basis of copy number, DNA methylation, and mRNA expression.

The initial part of this study finds that subtype 2, 3, and 6 cases have highest expression of replication components and subtypes 1, 4, and 5 lowest; subtypes with highest expression have decreased survival.

The second part of this study unexpectedly found that levels of EGFR expression overall were inversely proportional to the expression levels of multiple other important proliferation factors across the TCGA LUAD cohort.

Among the group CLPTM1L, PBXIP1, and URGCP like EGFR while showing increased expression over the EGFR cohort, inversely correlated with the expression of multiple key replication proteins over total LUAD. YKT6, KLHL7, FAM220A, and VOPP1 also had increased expression over the EGFR cohort but directly correlated with high expression of multiple proliferation genes.

The Kucherlapati Research Team concluded that, when EGFR activated cases do metastasize, they target the brain at a much higher rate that non-EGFR activated cases.

Credit: 
Impact Journals LLC

'Financial infidelity': What defines it, who is at risk, and what are the consequences?

image: This is Jenny Olson.

Image: 
Indiana University

BLOOMINGTON, Ind. -- Romantic partners aren't always honest about money in their relationships, but when does hiding purchases, debt and savings constitute "financial infidelity"? Research by professors at four universities, including Indiana University, defines the concept and provides a means for predicting its occurrence within relationships.

"Love, Lies and Money: Financial Infidelity in Romantic Relationships," forthcoming in the Journal of Consumer Research, is the first systematic investigation of financial infidelity in committed romantic relationships.

The professors define financial infidelity as "engaging in any financial behavior that is expected to be disapproved of by one's romantic partner and intentionally failing to disclose this behavior to them." It involves both the financial "act" and the subsequent concealment.

It differs from secret consumption and merely hiding spending because it involves a broader set of financial behaviors, including seemingly "positive" actions such as saving extra income in a personal bank account.

"Financial infidelity has the potential to be as harmful for relationship health and longevity as sexual infidelity, as conflicts over money are also a primary reason for divorce," said co-author Jenny Olson, assistant professor of marketing at the IU Kelley School of Business. "Given the role that finances play in the health of relationships, consumers benefit from being aware of financial infidelity and its consequences."

Growing in popularity is financial therapy, which combines finance with emotional support to help individuals and couples think, feel and behave with money to improve their overall well-being, make logical spending decisions and face financial challenges.

"An understanding of financial infidelity can benefit financial services companies and advisors, clinical therapists and relationship counselors, all of whom play a role in promoting consumer well-being," Olson said. "If couples seek professional financial advice, they must be willing to openly discuss their spending and savings habits, debts and financial goals. It is clear that financial infidelity is a barrier to effective planning, as well as to a healthy relationship."

The researchers developed a "financial infidelity scale (FI-Scale)" using a dozen lab and field tests. Key findings included:

Whether the financial act is expected to elicit any level of disapproval was more important than the degree of disapproval.

Consumers more prone to financial infidelity exhibited a stronger preference for secretive purchase options, such as using a personal credit card versus a jointly held card, and cash over credit.

A preference for ambiguous packaging and shopping at inconspicuous stores.

A greater likelihood of concealing financial information from their partner in a mobile banking app.

Each choice is relevant to marketers. The prevalence of financial infidelity among consumers and variations along the FI-Scale affect purchasing decisions. It is important that companies be aware of certain consumer segments that may be prone to financial infidelity and thus affect their bottom lines.

For example, the trend of businesses going "cash-free" may affect retailers such as beauty salons and gift shops because of the use of cash to disguise purchases. Consumers strategically using cash may be less willing to make purchases only for their pleasure or personal wants.

Credit: 
Indiana University

Boosting the impact of consumer research in the world

Researchers from the University of Southern California, Columbia, London Business School, George Washington University, University of Colorado-Boulder, and University of California Irvine published a provocative new paper in the Journal of Marketing that examines the relatively narrow impact of consumer research and suggests ways to change that situation.

The study, forthcoming in the March 2020 issue of the Journal of Marketing, is titled "Creating Boundary-Breaking Marketing-Relevant Consumer Research" and is authored by Deborah J. MacInnis, Vicki G. Morwitz, Simona Botti, Donna Hoffman, Robert V. Kozinets, Donald R. Lehmann, John G. Lynch, Jr., and Cornelia Pechmann.

Consumption and consumer behavior are interwoven into contemporary society. Therefore, marketers, journalists, policymakers, and members of the public all have a stake in the topics that consumer researchers study. So why is it that most consumer research has a relatively narrow impact on these marketplace stakeholders as well as on academics in other disciplines? Specifically, consumer researchers tend to cite scholars in other fields (e.g., psychology, anthropology, sociology) far more than scholars in other fields cite scholarly consumer research. Similarly, most business practitioners turn to accessible, business-related popular writers before they seek the advice of consumer researchers. In the policy realm, consumer researchers' influence is often dwarfed by that of economists, psychologists, and legal professionals.

The relatively narrow impact of consumer research is not due to a lack of talent or commitment of individual researchers, the quality or rigor of the work, or its potential to offer insights. Rather, a new article in the Journal of Marketing argues that consumer researchers handicap themselves by adhering to implicit boundaries or defaults about what they study, why they study it, and how they communicate their findings. Adhering to such defaults can limit their thinking, the knowledge they produce, how they execute research, and the range of stakeholders they reach with their findings.

As a consequence of these implicit boundaries, and despite its interdisciplinary and multi-stakeholder potential, consumer research is often perceived to lack significance. This practically means that instead of research contributing to business or society at large, impact is often limited to other closely related academics who study the same topics. This research team urges consumer researchers to break these boundaries in order to broaden their impact, lest they become irrelevant to non-academic marketing stakeholders and cede influence to non-marketing academic disciplines.

Why should and how does one engage in boundary-breaking marketing-relevant consumer research? This article offers answers to this question. It begins by presenting a conceptual framework that distinguishes the implicit boundaries that characterize most researchers' choices about marketing-relevant consumer research from boundary-breaking alternatives. The researchers then provide guidance to the ambitious consumer researcher seeking to contribute in this way. The authors note that a key way consumer researchers limit their influence has to do with why the research is done in the first place. Rather than attempting to influence like-minded academics in marketing and consumer research, the authors make the case for why and how to influence academics in other disciplines, as well as industry, government and nongovernmental organizations trying to help protect consumers, and society more broadly. Rather than relying so heavily on other academic articles for idea generation, the authors argue for looking outward for generating the ideas to be tested, and looking to emerging real-world phenomena. The authors argue that an important way that consumer researchers can contribute new and general theory is by explaining observations from these emerging real-world phenomena in terms of very general and basic concepts that have not yet been recognized by academic and practitioner experts.

The authors describe five published articles that exemplify boundary-breaking marketing-relevant consumer research. These articles have offered fresh and novel insights for academics in marketing and related disciplines. They also have had tangible and significant effects on other relevant marketplace stakeholders, including business, government, and society. Concrete lessons from these cases are provided to guide authors. Additional strategies designed to help researchers, faculty members who train Ph.D. students, and other gatekeepers identify actions that can facilitate and accelerate boundary-breaking consumer research are also described. This guidance is intended to both facilitate boundary-breaking consumer research and reduce the perception that the field's disciplinary norms and instructional practices make it too risky to have broader impact on stakeholders outside of academic marketing and consumer research.

Credit: 
American Marketing Association

There's a new squid in town

video: This is video of Euprymna brenneri.

Image: 
Jeffrey Jolly, OIST

"Cephalopods were the first intelligent animals on the planet."

This quote from Dr. Sydney Brenner, molecular geneticist and one of the founders of the Okinawa Institute of Science and Technology Graduate University (OIST), highlights the burgeoning scientific interest in cephalopods like cuttlefish, octopuses, and squid. These creatures are lauded for their complex nervous systems and intricate behavior - but scientists still know relatively little about them.

Now, researchers in OIST's Molecular Genetics Unit, in collaboration with a researcher from Australia, have identified a new species of bobtail squid inhabiting Okinawa's waters - dubbed Euprymna brenneri in honor of the late Dr. Brenner, who passed away earlier this year. The scientists' findings, published in Communications Biology, highlight the rich biodiversity in the seas near Okinawa, and may shed light on the genes, behavior, and development of bobtail squid.

"Our research strives to understand how these animals' complicated brains work," said Gustavo Sanchez, lead author of the study. "We're also compelled to explore why there is such a wide variety of species off the coast of Okinawa."

Finding and classifying a new species

Bobtails have unique features from true squid, including their rounded or "bobbed" posteriors, earning them the nickname "dumpling squid." In fact, they are actually more closely related to cuttlefish. Bobtails can be raised in the laboratory, making them useful as model for studying cephalopod development, genetics, and behavior. Scientists have also observed advanced behaviors like associative learning and inherited personality and fitness traits in bobtails.

For the present study, the researchers scoured the Ryukyan archipelago for bobtails, searching in shallow waters. They found three different types of egg masses and two distinct adult bobtails.

By studying the DNA and RNA expression, or transcriptomes, in 42 different individuals across 10 species, the researchers matched the adults with their corresponding egg types and identified one of them as Euprymna parva, which was previously miscategorized as a different genus. One egg mass lacked a corresponding adult; by DNA it appeared to be distantly related to a different species found in Australia and East Timor, Euprymna pardalota.

One Ryukyuan type of bobtail remained. In addition to sequencing its transcriptome, the scientists closely analyzed its morphology; Jeff Jolly observed distinctive patterns of suckers on its arms and tentacles. The researchers enlisted the help of systematist Dr. Amanda Reid, from the Australian Museum in Sydney, to carefully look over the species and formally describe them.

From their analyses, the scientists confirmed they had found a new species, which they named Euprymna brenneri. This species is the eleventh known in the Euprymna genus and will be useful in future phylogenetic and comparative studies, the researchers said.

"Sydney Brenner was a mentor and a friend. It is an honor to name this new species after him as a small reminder of his importance in creating the field of molecular biology, and more broadly his efforts to foster the development of science in Okinawa, Singapore, and around the world," said Daniel Rokhsar, head of the Molecular Genetics Unit at OIST.

In addition to phylogeny, the scientists are interested in the bobtail squid's symbiotic relationship with the Vibrio fischeri bacteria that populate a pouch-like organ on the squid's underside. Bobtails conceal themselves under the sand throughout the day, then emerge at night to hunt. They use the bacteria, which glow, to help them camouflage and achieve more successful predation in the dark.

"There's a complicated choreography between the bacteria and squid," said Dr. Oleg Simakov, a co-author of the study. "If we can understand this relationship, we think the bobtail could be a useful model organism for host-microbe interactions."

Moving forward, the researchers hope to discover more about the rich diversity of cephalopods off the shores of Okinawa, and to further explore the relationships between different bobtail species.

Credit: 
Okinawa Institute of Science and Technology (OIST) Graduate University

Plant researchers examine bread aroma: Modern and old wheat varieties taste equally good

image: Identical recipes were used to bake breads from different wheat varieties which were then sampled. Already the external appearance of each of the breads varies considerably.

Image: 
BeckaBeck

The scientists compared taste and aroma of different breads baked in close cooperation with an artisan baker and a miller using flour from old as well as modern wheat varieties. In the journal Food Research International the research team now also describes how it can predict not only the taste but also other characteristics of bread using molecular biological approaches.

Wheat is one of the world's most important agricultural crops. In recent decades, new varieties have been cultivated. Not only are they considerably higher yielding than the older varieties but also less susceptible to pests and changing climatic conditions. In addition to that, their baking characteristics have also been improved.

In the past, the aroma (i.e. smell and taste) of bread baked from wheat flour was never important and therefore not considered during breeding, cultivation, nor was it a decisive factor in trade. One of the reasons for that is that analysing the aroma of different breads is time consuming. A comprehensive study has now examined the aroma potential of various old (i.e. released before 2000) and modern wheat varieties using molecular biology methods to predict the aroma.

The study shows how science can successfully be part of and contribute to the value chain: Several institutes at HHU and the University of Hohenheim worked on this research project alongside researchers from Zurich University of Applied Sciences, the Max Planck Institute (MPI) of Molecular Plant Physiology in Golm as well as the Beck bakery in Römerstein, Stelzenmühle mill in Bad Wurzach and the District Agricultural Office (Kreislandwirtschaftsamt) in Münsingen.

80 breads for science

To be able to compare the different aromas of a total of 40 varieties of wheat, the research team produced doughs from each variety, always using the same recipe, which were then baked. To determine whether potential differences in aroma are attributable to the respective wheat variety or to the location where that particular type of wheat was grown, two breads were baked from each variety: one with wheat grown in Gatersleben and one with wheat grown in Stuttgart-Hohenheim.

The doughs and breads were first compared based on external parameters (dough elasticity, bread size). Test persons next assessed the smell and taste of the breads following a pre-determined procedure. First the testers described in general terms how aromatic - or bland - the bread tasted. In a second step, a detailed assessment was made using the so-called 'Wäderswiler Aromarad'.

Differences in aroma depend on wheat variety and cultivation location

"I am often told that modern varieties produce blander breads than older varieties," explains Extraordinary Professor Dr Friedrich Longin from the University of Hohenheim. "We were able to prove that this is not the case. Some of both the old and the modern varieties produced very tasty breads. It is fascinating how the breads differ in taste and aroma depending on the wheat variety we used."

Master baker Heiner Beck from Römerstein baked and tasted all of the breads: "I have made and tasted a lot of breads from different wheat varieties in my time. But I'm surprised by how the breads from the different wheat varieties differ in terms of shape, aroma and even colour."

Another noteworthy finding is that the soil in which the wheat was grown has almost as much influence on the baking result and the taste of the bread as the wheat variety used. This reflects varying soil properties as well as different nutritional and mineral contents of the soils, all of which influence the composition of the wheat grains.

Molecular biological methods make it possible to predict bread quality

"A key aspect of our study is that we have found methods based on molecular markers and the metabolite profiles of the flours which can be used to predict the quality of bread", highlights Professor Dr Benjamin Stich from the Institute of Quantitative Genetics and Genomics of Plants at HHU. Together with the MPI, the HHU researchers determined the metabolic products found in the flour and carried out the statistical analysis to predict the bread characteristics.

This new method brings with it a decisive advantage for plant breeding: In order to breed a new wheat variety to be eventually put on the market, very large numbers of plants - several thousand per year - are regularly produced, all of which must be analysed to determine their properties. "It would be much too expensive and time consuming to make breads from all of those plants and to taste them all", explains Stich. With the new method, however, the grower can very quickly distinguish the plants that produce better-quality breads. This way, the number of plants to be included in a final baking test can be reduced considerably.

Credit: 
Heinrich-Heine University Duesseldorf

Study reveals rapid increases in cannabis use among individuals with depression

December 11, 2019 -- Results of a new study suggest that over the past decade (2005-2017), the prevalence of cannabis use in the United States has increased among persons with and without depression, though the increase is significantly more rapid among those with depression. At the same time, the perception of risks associated with cannabis use have declined overall, and the decline has been more rapid among those with depression. The findings, which are published in Addiction, come from a survey-based study of 728,691 persons aged 12 years or older.

In 2017, cannabis use was approximately twice as common among those with depression. Perception of risks associated with cannabis use has appeared to act as a barrier to cannabis use in the general population.

"The prevalence of cannabis use among those with depression who perceived no risk associated with regular use was much higher than among those who perceived significant risk associated with use -- 39 percent versus 1.6 percent, respectively," said corresponding author Renee Goodwin, PhD, of Columbia University Mailman School of Public Health and The City University of New York. "With increasing legalization in the U.S., previous studies have shown that perception of risk associated with use is declining overall. The results of this study show that this decline is even more rapid among this vulnerable population: those with depression."

In 2017, the prevalence of past month cannabis use was 19 percent among those with depression and 9 percent among those without depression. Daily cannabis use was common among 7 percent of those with depression and among 3 percent of those without it.

Certain groups appeared more vulnerable to use. For instance, nearly one third of young adults (30 percent) aged 18 to 25 with depression reported past 30-day use. "As brain development is ongoing until at least age 25, and young persons with depression are especially vulnerable, this is a group who may need attention in terms of prevention and intervention," noted Goodwin.

"Depression is not generally a condition for which medicinal cannabis is prescribed, and it is not clear why recreational use would occur disproportionately among those with depression," observed Goodwin. "It is conceivable that cannabis may be increasingly used in an attempt to self-medicate depression in states where it is legal for recreational use."

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Columbia University's Mailman School of Public Health

A research team develop biotransistors able to hear small beats of live

One of the tests that almost every patient must face before a surgery or other health intervention is an electrocardiogram. To perform this screening, medical doctors traditionally use a set of electrodes, which are able to record the electrical activity of the heart. The question is: what happens when the signal is much smaller, for instance, when you want to hear the beat of small clusters of cells or groups of cells within tissues?

Scientists have been addressing this issue for years, since solving this drawback may pave the way in drug development and screening. Of equal importance, the development of these techniques together with the use of pluripotent stem cell derivatives opens the door not only to immediate applications in the cardiac field, but in other important areas of research, as the neural field.

Now, experts at the Institute for Bioengineering of Catalonia (IBEC), in collaboration with the Institute of Materials Science of Barcelona (ICMAB-CSIC), have achieved a new milestone. By developing a bio-platform that integrates in its core an organic electronic device called Electrolyte Gated Organic Field Effect Transistor (EGOFETs), researchers have been able to monitor the electrical signal of cells and micro-tissues during long periods of time. The work is the result of a fruitful multidisciplinary collaboration between an organic electronic devices team (led by Dr. Marta Mas-Torrent from ICMAB), a bioengineering team (led by UB Professor Gabriel Gomila at IBEC) and a stem-cell tissue engineering team (led by ICREA Research Professor Núria Montserrat at IBEC), with the collaboration on instrumentation development from Dr. Tobias Cramer, from the University of Bologna in Italy.

"It was amazing to see how the electrophysiological platform developed with seeded cardiac cells was functional for several weeks without degrading its performance. This capability opens endless applications in biology and biomedicine."

Dr. Adrica Kyndiah, first author of the paper and researcher at IBEC.

Printed and flexible transistors were fabricated by the group of Dr. Marta Mas-Torrent at ICMAB-CSIC. Then the surface of the EGOFET, and the full platform, was adapted to interface the cardiac cell clusters derived from human pluripotent stem cells for long time periods (several weeks). According to the authors of the paper published in the journal Biosensors and Bioelectronics, the main advantage of using such EGOFETs for bioelectronics recording is three-fold:

First of all, EGOFETs are made of an organic material on a mechanically flexible substrate, they are biocompatible in nature and show a robust performance when operated in physiological environment. Secondly, a transistor offers intrinsic signal amplification without the use of external amplifiers as compared to conventional electrodes thus resulting in high signal to noise ratio. And third, it operates at low voltages preventing cell damage or unintentional cell excitation.

Researchers at IBEC not only tested the device on cardiac cells and cardiac micro-tissues, but also investigated the effect of two well-known drugs affecting cardiac performance. Thus, screening of new compounds in cardiomyocytes and other pluripotent stem-cell derived electrical cells (such as neurons) would be now possible. This advance in turn would result in the reduction in the use of animal models for these applications.

According to the multidisciplinary team, the results are a proof of concept work, which could be extended from in vitro study towards in vivo recordings of organs and tissues and to implantable devices to monitor health.

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Spanish National Research Council (CSIC)

Blood pressure drug could help problem drinkers: QUT research

image: Researcher Dr Omkar Patkar and colleagues

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QUT

A drug used to treat high blood pressure may alleviate anxiety induced by long-term heavy alcohol use, and also halt the damage such drinking can cause to the brain's ability to grow new cells, research at the Queensland University of Technology (QUT) shows.

The findings, from a study conducted in adult mice, have been published in the journal Frontiers in Behavioral Neuroscience.

Principal investigator and QUT neuroscientist, Professor Selena Bartlett, said the results add further evidence that the drug, pindolol, could be beneficial in treating alcohol use disorders.

"This is a drug that is inexpensive and already available in the US, Canada, Europe, and Australia," she said. "It's a beta-blocker that is prescribed for high blood pressure, angina and heart arrhythmias.

"We have been studying it for a number of years and have already shown in animal models that it reduces alcohol intake when there is long-term consumption.

"In this latest study, we investigated the drug's effect on other alcohol associated issues - anxiety and neurogenesis.

"Long-term and heavy drinking can cause anxiety disorders, and people's anxiety can worsen when alcohol is withdrawn, and alcohol abuse can also reduce neurogenesis, which is the process by which new neurons (cells) are formed in the brain.

"We showed that pindolol reduced alcohol-associated anxiety-like behaviour in mice and also alleviated the damaging effects of alcohol consumption on newly formed and immature brain cells."

Professor Bartlett said repurposing drugs like pindolol was a way to fast-track new treatments to manage alcohol dependence, binge-drinking and addiction, which are significant and complex problems both in Australia and globally. The costs to society of alcohol-related problems in Australia in 2010 was estimated at more than $14 billion, including costs to the health system and lost productivity.

"The next step is to conduct clinical trials with pindolol and we have started discussions with a medical specialist to progress that," Professor Bartlett said.

Co-investigators with Professor Bartlett in the study are QUT postdoctoral research fellow Dr Arnauld Belmer, Dr Omkar Patkar (previously a QUT research fellow), QUT PhD researcher Kate Beecher, and Dr Angela Jacques, who recently completed her PhD.

Key study findings:

pindolol reduced the anxiety-like behaviour of mice when alcohol was withdrawn after 12 weeks of binge-like consumption

two weeks of daily pindolol treatment at the end of 18 weeks' alcohol consumption restored damage the alcohol caused to new and immature neurons (cells) in the hippocampus, the primary brain site for new neuron production

the drug acts on the receptors for serotonin, the 'feel-good' nerve cell chemical and neurotransmitter, and noradrenaline, which is involved in the body's 'fight or flight' response

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Queensland University of Technology

How sand fly mating habits are helping tackle tropical disease in £2.5 million project

video: This is a light trap full of sand fly vector.

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University of Warwick

The tropical disease Leishmaniasis is being tackled by catching female sand flies who carry the parasite that causes the disease.

Scientists led by Professors Orin Courtenay of Warwick University and Gordon Hamilton of Lancaster University, developed the concept as part of a £2.5M project funded by The Wellcome Trust and published in PLOS Neglected Tropical Diseases.

There are now plans to commercialise the research which involves using male pheromones to attract female sand flies towards insecticide-treated areas.

Globally over 350 million people are at risk of infection from Leishmaniasis, with an estimated 300,000 cases annually, and approximately 4,500 deaths each year in Brazil alone. Children under the age of 15 are disproportionately affected.

Visceral Leishmaniasis, affects the internal organs and is fatal if untreated as there is no human vaccine for the disease. In Latin America, Europe, and parts of central and East Asia, the Leishmaniasis parasite is transmitted from infected dogs by sand flies when they bite people.

In Brazil, dogs are euthanized if they are found to be infected, but which has not impacted on controlling transmission. Insecticide-impregnated dog collars is an alternative to protect the dogs but these are too expensive for many people and protective coverage is patchy.

The beneficial effects of this "lure-and-kill" method reduced female sand flies by 49% compared with 43% for the insecticide-collar only.

The method works as the male sand fly vector produces a pheromone that attracts blood-seek females to mating aggregations. We developed a synthetic copy of the pheromone which was put into slow-release dispensers and co-located with pyrethroid insecticide outside resident houses, which kill the parasite transmitting vectors.

The insecticide-collars have been shown by the Warwick researchers to reduce human visceral Leishmaniasis by 50%

Professor Orin Courtenay from the School of Life Sciences and Zeeman Institute at the University of Warwick comments:

"The beneficial effects of the lure-and-kill method were most noticeable by reducing confirmed infection incidence and clinical parasite loads in dogs by about 50%, and in reducing sand fly abundance.

"Our approach will be a lot less expensive and gives just as good a result as the insecticide collar."

Professor Hamilton said: "We wanted to develop a less costly method to trap large amounts of sand flies to reduce the number of infected dogs which in turn act as a source of infection for people."

The researchers introduced a sachet of the male sand fly pheromone to attract female flies to chicken sheds already sprayed with insecticide.

"This killed a large number of the sand flies".

The next stage is to work with industry to synthesize the pheromone in bulk ready for use in affected areas.

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University of Warwick

Recommendations for responding to the Fridays for Future movement

image: The Futuring Tool can help decision-makers address both climate action and engagement with young people.

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IASS

The level of public concern about climate change has risen significantly in recent years. The Fridays for Future movement enjoys broad political and public support, but this has so far not translated into tangible changes. The Institute for Advanced Sustainability Studies in Potsdam, Germany, has now published a resource - the Futuring Tool - and a more comprehensive Policy Brief aimed at decision-makers who want to make climate protection a guiding principle of their work.

"The world is waking up to the need to increase ambition on climate change. This tool can help us address both climate action and engagement with young people by looking at our decision-making processes and showing how they can be reformed," explains author Elizabeth Dirth. Her work integrates theoretical and practical insights: A social and political scientist by training, Dirth has spent the last seven years working on sustainability-related issues in research institutes and non-governmental organisations. She is also the co-founder of the Scottish youth organisation 2050 Climate Group.

There are two versions of the futuring tool: one geared to policymakers and one aimed at NGOs and businesses. "Giving a young person a microphone will not solve the climate crisis. We can amplify the voices of young people over and over again, but at some point we must actually start doing things differently," emphasises Dirth. The tool describes processes that can help to ensure more just future-making and guides readers step-by-step through the task of selecting measures that are appropriate to their particular contexts.

The Policy Brief delves deeper into the concept that is at the heart of both publications: just future-making. Here Dirth proposes three core principles that decision-makers should heed:

Integration: Policymakers should consider context-appropriate methods to integrate the future into decision-making. This could take place through the introduction of new elements into existing processes, such as additional budget scrutiny, as well as reforming the remits of already existing bodies or processes.

Participation: Policymakers should utilise participatory processes to inform and guide their decisions. This could be in the form of youth-specialised participatory processes, or broader, society-wide pro-cesses such as citizens' assemblies.

Imagination: Policymakers should use creative and imaginative exercises to engage with the future in order to build a new collective cultural imagination. A new collective cultural imagination is necessary to bring us out of the fossil-fuel age. Exercises like visioning and back-casting, as well as other experimental and creative practices, have an important role to play here.

The publications are aimed at governments, policymakers and other local, national, and international organisations that want to respond meaningfully to the demands of the Fridays for Future movement and ensure climate justice for future generations. The author is happy to provide further support and advice on request. Please contact Ms Dirth at elizabeth.dirth@iass-potsdam.de.

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Research Institute for Sustainability (RIFS) – Helmholtz Centre Potsdam

Isotope analysis points to prisoners of war

image: After the bodies had been dismembered, the body parts were placed at the bottom of an artificial water reservoir and covered with large stone blocks.

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© Photo: Nicolaus Seefeld

Several years ago, Maya archaeologists from the University of Bonn found the bones of about 20 people at the bottom of a water reservoir in the former Maya city of Uxul, in what is now Mexico. They had apparently been killed and dismembered about 1,400 years ago. Did these victims come from Uxul or other regions of the Maya Area? Dr. Nicolaus Seefeld, who heads the project that is funded by the Gerda Henkel Foundation at the University of Bonn, is now one step further: A strontium isotope analysis by the National Autonomous University of Mexico (UNAM) showed that some of the dead grew up at least 95 miles (150 kilometers) from Uxul.

Strontium is ingested with food and stored like calcium in bones and teeth. The isotope ratios of strontium vary in rocks and soils, which is why different regions on earth have their own characteristic signatures. "As the development of tooth enamel is completed in early childhood, the strontium isotope ratio indicates the region where a person grew up," says Dr. Nicolaus Seefeld, who heads a project at the University of Bonn on the mass grave of Uxul and the role of ritualized violence in Maya society.

Together with researchers from the Isotope Geochemistry Laboratory of the Geophysics Institute at the National Autonomous University of Mexico (UNAM), Seefeld took tiny samples of tooth enamel from a total of 13 individuals early this summer. "Unfortunately it was not possible to examine the strontium isotope ratio of the remaining individuals, because the teeth were too decayed and the result would have been distorted," reports Seefeld.

The victims apparently had a high social status

The results of the isotope analysis show that most of the victims grew up at least 95 miles (150 kilometers) from Uxul in the southern lowlands, in what is now Guatemala. "However, at least one adult and also one infant were local residents from Uxul," says the researcher. They were apparently mostly people of high social status, as eight of the individuals had elaborate jade tooth jewelry or engravings in their incisors.

In 2013, Seefeld was investigating the water supply system of the former Maya city of Uxul when he discovered a well, in which the remains of about 20 people had been buried during the seventh century AD. The excavations of this mass grave were carried out as part of the Uxul archaeological project by the Department for the Anthropology of the Americas at the University of Bonn, which was headed by Prof. Dr. Nikolai Grube during the research period from 2009 to 2015. The investigations of the mass grave have been under the leadership of Dr. Seefeld and funded by the Gerda Henkel Foundation since January 2018.

Detailed investigations revealed that, in addition to at least 14 men and one woman, the mass grave contained the remains of several adolescents and an 18-month-old infant. Nearly all the bones showed marks of cuts and injuries by stone blades. Their regular distribution clearly shows that the individuals had been systematically and deliberately dismembered. The victims were killed and decapitated outside the water reservoir, then dismembered and the body parts placed at the bottom of the reservoir.

Heat marks on the bones showed that the bodies were exposed to fire - presumably so that skin and muscles could be removed more easily. However, there were no human bite marks on the bones that would indicate cannibalism. After dismemberment, body parts that were originally connected were deliberately placed as far apart from each other as possible. "This clearly demonstrates the desire to destroy the physical unity of the individuals," says Seefeld.

Killing and dismemberment as a demonstration of power

The latest results of the strontium isotope analysis and the anthropological investigations now allow more precise conclusions about the identity of the victims and the possible reasons for the killings. It is known from pictorial representations of ritual violence of the Classic Maya that the beheading and dismemberment of humans mostly occurred in the context of armed conflicts. These representations often show victorious rulers who chose to take the elites of the defeated city as prisoners of war and later publicly humiliate and kill them. "The documented actions in Uxul should therefore not be regarded as a mere expression of cruelty or brutality, but as a demonstration of power," says Seefeld.

The most plausible explanation for the current evidence is that the majority of the victims were prisoners of war from a city in the southern Maya lowlands, who were defeated in a military confrontation with Uxul. These formerly powerful individuals were then brought to Uxul and killed. Seefeld recently presented his findings at the Archaeological Conference of Central Germany in Halle and at the conference "Investigadores de la Cultura Maya" in Campeche in Mexico.

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University of Bonn