Culture

Machine learning enhances light-matter interactions in dielectric nanostructures

image: (a) Schematic of a tandem neural-network used for the inverse design of a Fano resonant metasurface for enhancing (b) nonlinear generation and optomechanical vibrations.

Image: 
SPIE

BELLINGHAM, Washington, USA - A paper published in Advanced Photonics "Enhanced light–matter interactions in dielectric nanostructures via machine-learning approach," suggests that machine-learning techniques can be used to enhance metasurfaces, optimizing them for nonlinear optics and optomechanics. The discovery has promising possibilities for the development of a wide range of photonic devices and applications including those involved in optical sensing, optoacoustic vibrations, and narrowband filtering.

Metasurfaces are versatile platforms used to manipulate the scattering, color, phase, or intensity of light that can be used for light emission, detection, modulation, control and/or amplification at the nanoscale. In recent years, metasurfaces have been a subject of undergoing intense study as their optical properties can be adapted to a diverse set of applications, including superlenses, tunable images, and holograms.

According to Advanced Photonics Co-Editor-in-Chief, SPIE Fellow, and Head of Photonics & Nanotechnology Group at King's College London Anatoly Zayats, this work marks an exciting advancement in nanophotonics.

"Optimization of metasurfaces and metamaterials for particular applications is an important and time-consuming problem," said Zayats. "With traditional approaches, only few parameters can be optimised, so that the resulting performance is better than for some other designs but not necessarily the best. Using machine learning, one can search for the best design and cover the space of parameters not possible with traditional approaches."

Credit: 
SPIE--International Society for Optics and Photonics

Study on firms' return policies offers guidance on pricing, returns, refunds

Because customers who shop online cannot try on their purchases, a third of all Internet sales get returned. But handling these returns is costly, giving retailers that have both physical stores and digital sales a clear advantage over retailers that operate only online. A new study examined the decisions around the pricing and return policies of a retailer with both stores and online sales to help explain why some firms opt to fully refund customers for their returns while others charge a fee for online returns. The findings offer guidance to retailers about pricing and policies on returns and refunds.

Conducted by researchers at Carnegie Mellon University and the University of Washington, the study appears in Management Science.

"Our study can help firms with stores and online sales decide when to offer full refunds or charge a fee for online returns," says Soo-Haeng Cho, Associate Professor of Operations Management at Carnegie Mellon University's Tepper School of Business, who coauthored the study. "Our work shows that firms should consider offering full refunds whenever they can salvage online returns at mild discounts or if most of their customers choose to visit their stores before purchasing. They may also want to charge a fee for online returns to push customers toward using free in-store returns."

Researchers examined a retailer that sold a product through two channels--in stores and online--to customers who faced uncertainty about the valuation of the product--that is, they didn't know how much they would like the product. The customers differed in how they resolved that uncertainty--some evaluated the product in person at a store before deciding to purchase it while others bought the product online with the option of returning it if it did not fit. The cost of a product was the same whether it was purchased in the store or online, and the firm allowed free returns to its stores, but charged a fee for some products returned by mail (referred to as online returns).

The study found that when customers returned products online, the optimal refund given by a firm with both store and online sales was more generous than refunds given by firms that sell their products only online or only in a store. The refunds were often larger than the salvage value (how much the firm can get from the product after it is returned, either by selling it again or by recycling it) and may even have been a full refund. The findings help explain why some firms with both stores and online sales choose to offer full refunds while others charge a fee for online returns.

Specifically, the study found that firms with both physical stores and online sales that have good salvage partners (companies that will buy returned items for a reasonable price) for online returns (e.g., Nordstrom and firms like it that own their own outlet stores) and those with more customers who use their physical stores (e.g., Macy's) may offer full refunds. Similarly, the study found that firms have incentives to offer full refunds for products that customers are more likely to inspect in store (e.g., Express for footwear).

The authors suggest that firms with a significant network of stores and better in-store salvage opportunities (e.g., J.C. Penney) might be better off charging a fee for online returns to encourage customers to return items in stores. But they note that firms with both stores and online sales should be cautious in making the return process more convenient and improving accessibility to its stores because these seemingly beneficial policies, when combined with a policy offering partial refunds, could undermine firms' overall profit.

"Our work is a first step in capturing the complex dynamics that motivate different firms' choices surrounding return policies," explains Leela Nageswaran, Assistant Professor of Operations Management at the University of Washington, who coauthored the study (Nageswaran received her Ph.D. from the Tepper School of Business). "Return policies can be a valuable tool for firms with both stores and online sales, especially when firms use them to sway customers' choice of the way they return items as well as how they purchase products."

Credit: 
Carnegie Mellon University

Persistent and worsening insomnia may predict persistent depression in older adults

Older adults with depression may be at much higher risk of remaining depressed if they are experiencing persistent or worsening sleep problems, according to a study from researchers at Johns Hopkins Bloomberg School of Public Health.

The researchers, who published their findings online April 30 in the journal Sleep, analyzed data from almost 600 people over 60 years old who visited primary care centers in the Northeast U.S. All patients met clinical criteria for major or minor depression at the outset of the study.

The researchers found that those with a pattern of worsening insomnia symptoms over the following year had almost 30 times the odds of having a diagnosis of major depression at the end of that year, compared to patients whose sleep had improved during that year. The patients with worsening insomnia also were much more likely to have a diagnosis of minor depression. Additionally, they were more likely to report suicidal ideation at the end of the year.

Compared to patients whose sleep improved, the study found that those with insomnia symptoms that persisted but did not worsen also were more likely to have persistent major or minor depression, but their risk was not as high as patients with worsening sleep.

"These results suggest that, among older adults with depression, insomnia symptoms offer an important clue to their risks for persistent depression and suicidal ideation," says study senior author Adam Spira, PhD, professor in the Department of Mental Health at the Bloomberg School. The study's lead author was Joseph Gallo, MD, MPH, professor in the Bloomberg School's Department of Mental Health.

Sleep, or lack thereof, has long been considered a potential risk factor for mood disorders, and has more recently been studied in relation to suicidal thinking. In an earlier study of older adults living in low- and middle-income countries, Spira, Gallo, and colleagues found that older adults reporting insomnia symptoms and poor sleep quality were more likely to report having suicidal thoughts, and that those with insomnia symptoms were more likely to report a prior suicide attempt.

In their new analysis, the researchers examined data from a sleep and mental health study conducted from May 1999 to August 2001, covering older adults at 20 primary care centers in New York City, Philadelphia, and Pittsburgh.

"There otherwise hasn't been much research on insomnia and depression in older adults in primary care settings--even though primary care is where most people with depression are treated," Spira says.

The analysis covered 599 study patients, of whom 429 (71.6 percent) were women. At the outset of the study, the patients' average age was 70.3 years, and two-thirds met criteria for major depression, while the rest met criteria for minor depression.

The researchers examined the patients' reports of insomnia symptoms--chiefly difficulty falling asleep or waking without a full night's sleep--over 12 months, and sorted them into three groups based on their reports: 346 patients who started with fewer sleep problems and slept much better by the end of the study; 158 who started with more sleep problems and stayed the same or improved only slightly over the year; and 95 patients who at baseline had more sleep problems and worsened over the year.

The analysis revealed that, compared to the patients whose sleep had improved, those with worsening sleep disturbances had 28.6 times the odds of having a diagnosis of major depression at the end of the year--as opposed to no longer having a depression diagnosis.

The patients whose sleep worsened also had 11.9 times the odds of having a diagnosis of minor depression at the end of the year and were 10 percent more likely to report having suicidal thoughts at the end of the year.

"We can't say that the sleep disturbances we're seeing are necessarily causing the poor depression outcomes," Spira says. "But the results suggest that older adults who are being treated for depression and whose sleep problems are persistent or worsening need further clinical attention. They also suggest that treating sleep problems should be explored further as a potential means to improve depression outcomes in older people--as well as the poor cognitive and general health outcomes that have been tied to disturbed sleep in this population."

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Johns Hopkins Bloomberg School of Public Health

Naked mole-rats need carbon dioxide to avoid seizures and here's why

image: This image shows an African naked mole-rat

Image: 
Roland Gockel

African naked mole-rats are sometimes referred to as animal superheroes. They resist cancer, tolerate pain, and live a remarkably long time. They're also known for their ability to handle high levels of carbon dioxide and can go for several minutes without oxygen. But researchers reporting in Current Biology on April 30 say they may have found the mole-rats' kryptonite: they need high levels of carbon dioxide to function.

"While they thrive in their cramped nest quarters, the air composition just above the surface of their burrows in East Africa makes them vulnerable to seizures," said Dan McCloskey of The City University of New York. "Because that's what happens when naked mole-rats lose carbon dioxide."

In other words, the mole-rats don't just tolerate high levels of carbon dioxide in their crowded nests; it appears that they actually require it. When they reach the hot surface and start heat-induced hyperventilation in the fresh air, it sends them into seizures. In the study now reported, the researchers found that this curious need for carbon dioxide is explained by the presence of a missense mutation in a gene that encodes the major neuronal chloride transporter known as KCC2.

The researchers came to this discovery in an unexpected way. Naked mole-rats have little control over their body temperature and also are prone to seizing in response to heat, they knew. McCloskey and first author of the new study Michael Zions had been exploring this susceptibility to fever-like conditions as a model for fever-induced (febrile) seizures in human children.

The team joined forces with Kai Kaila and Martin Puskarjov, University of Helsinki, Finland. Kaila, an expert in febrile seizures, and Puskarjov had earlier found a mutation affecting KCC2 in families of people prone to them. What they now know is that mole-rats and those families with a genetic predisposition for febrile seizures carry the very same genetic change.

"We knew there was some value in the line of inquiry, but we had no idea that the similarities would go all the way down to the genetic level," Kaila said.

"The identification of the genetic polymorphism in the naked mole-rat KCC2 was a surprise," Puskarjov added. "Aside from a small subset of humans, naked mole-rats are now the only other mammals known to harbor this variant."

Further study yielded more surprises. When the researchers gave a naked mole-rat the anti-seizure drug diazepam, the drug triggered a seizure rather than preventing one. While the result was unexpected, it helped them make sense of years of unusual behavioral and electrophysiological data: the naked mole-rats were relying on carbon dioxide to help them compensate for deficiencies in their brain's inhibitory GABAergic system.

KCC2 is a chloride transporter: its normal job is to control the amount of chloride inside of neurons. In a typical adult mammal, chloride levels in central neurons are kept low. When the neurotransmitter GABA binds to a neuron, chloride enters and blocks the activity of the neuron. This ability to reduce neural activity is essential for many thousands of neurons to work together in coordinated fashion and avoid becoming overexcited. In the naked mole-rat and people with the mutation, KCC2 doesn't clear chloride from neurons as effectively. As a result, this inhibitory cascade doesn't work as well.

"Naked mole-rat brains lack some of the inhibition that a mammal needs. Instead, they're using the carbon dioxide to get back to where they have to be," Zions said. "They prefer CO2 levels that would panic a person, but are troubled by fresh air. They've leveraged a liability to literally dig themselves a niche."

As the researchers explain, an inhibition-impaired brain would normally be a handicap as it is in people prone to febrile seizures. It works for naked mole-rats because they rely on their carbon dioxide-rich environments to help keep their brain within normal parameters. "We believe they are utilizing nest carbon dioxide to offset their impoverished GABA system," Kaila said.

The researchers think the findings may provide an essential clue as to why the naked mole-rats are one of only two mammalian species to evolve eusociality, living together in highly cooperative colonies.

"Low carbon dioxide areas may cause hyperexcitability and overstimulation or anxiety. Their brain physiology urges them to go back to the nest rather than set out on their own," McCloskey said. Support for this idea comes from the researchers' discovery that the only other eusocial mammal, the Damaraland mole-rat, has a slightly different mutation in the exact same location on the KCC2 gene as the naked mole-rat.

In addition to the insights into mole-rat evolution, the findings may also have implications for people who carry the KCC2 variant, including those prone to febrile seizures and people with idiopathic generalized epilepsy, schizophrenia, or autism who in some cases also have the variant, according to the researchers. "The breathing patterns and carbon dioxide needs of these individuals is something to consider," Kaila said.

Credit: 
Cell Press

The story of three African slaves during Spanish colonialism, as told by their bones

image: This image shows the skull of one of the individuals studied along with tubes for genetic and isotope testing.

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Collection: San José de los Naturales, Post Graduate Studies Osteology Laboratory, Escuela Nacional de Antropología e Historia Photo: Rodrigo Barquera

Despite the infamy of the transatlantic slave trade, scientific research has yet to fully explore the history of the enslaved Africans brought into Latin America. In a study appearing April 30th in the journal Current Biology, scientists tell the story of three 16th century African slaves identified from a mass burial site in Mexico City. Using a combination of genetic, osteological, and isotope analyses, the scientists determined from where in Africa they were likely captured, the physical hardships they experienced as slaves, and what novel pathogens they may have carried with them across the Atlantic. This study paints a rare picture of the lives of African slaves during early Spanish colonization and how their presence may have shaped disease dynamics in the New World.

"Using a cross-disciplinary approach, we unravel the life history of three otherwise voiceless individuals who belonged to one of the most oppressed groups in the history of the Americas," says senior author Johannes Krause, an archaeogeneticist and professor at the Max-Planck Institute for the Science of Human History.

The three individuals were found within a mass grave at San José de los Naturales Royal Hospital in Mexico City, an ancient hospital site largely devoted to servicing the indigenous community. "Having Africans in central Mexico so early during the colonial period tells us a lot about the dynamics of that time," says first author Rodrigo Barquera (@jrockdrigo), a graduate student at the Max-Planck Institute for the Science of Human History. "And since they were found in this mass burial site, these individuals likely died in one of the first epidemic events in Mexico City."

Researchers extracted genetic and isotope data from the individuals' teeth, piecing together their lives before enslavement. "Their genetics suggest they were born in Africa, where they spent all of their youth. Our evidence points to either a Southern or Western African origin before being transported to the Americas," says Barquera.

A close look at their bones revealed a life of severe hardship once they arrived in the Americas. Anthropologists found large muscle insertions in the upper body of one skeleton, likely pointing to continuous physical labor. Another individual had the remnants of gunshot wounds from copper bullets, while the third had a series of skull and leg fractures. The team could also tell, however, that the abuse did not end their lives. "Within our osteobiographies we can tell they survived the maltreatment that they received. Their story is one of difficulty but also strength, because although they suffered a lot, they persevered and were resistant to the changes forced upon them," Barquera says.

From the remains, researchers also recovered the genetic material of two pathogens that infected two of the individuals while they were alive. "We found that one individual was infected with hepatitis B virus (HBV), while another was infected with the bacterium that causes yaws--a disease similar to syphilis," says co-senior author Denise Kühnert, a mathematician working on the phylogeny of disease, from the Max-Planck Institute for the Science of Human History. "Our phylogenetic analyses suggest that both individuals contracted their infections before they were likely forcibly brought to Mexico."

These are the earliest human remains in Americas in which HBV and yaws have been identified, suggesting that the slave trade may have introduced these diseases into Latin America very early into the colonial period. This is particularly meaningful for yaws, as it was rather common in Mexican people during the colonial period. "It is plausible that yaws was not only brought into the Americas through the transatlantic slave trade but may subsequently have had a considerable impact on the disease dynamics in Latin America," says Kühnert.

By conducting science in this interdisciplinary manner, researchers are now able to answer deep questions about the roots of Mexican culture. "We want to get insights into how pathogens emerged and spread during the colonial period in the New Spain, but we also want to continue to explore the life stories of the Africans brought here and other parts of the Americas. That way they can take a more visible place in Latin American history," says Barquera.

Credit: 
Cell Press

African skeletons from early colonial Mexico tell the story of first-generation slaves

image: Skulls and dental decoration patterns for the three African individuals from the San José de los Naturales Royal Hospital. A. Skull from individual 150 (SJN001). B. Skull from individual 214 (SJN002). C. Skull from individual 296 (SJN003). D. Close-up of dental modification patterns for individual 150 (SJN001). E. Close-up of dental modification patterns for individual 214 (SJN002). F. Close-up of dental modification patterns for individual 296 (SJN003).

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Collection of San José de los Naturales, Osteology Laboratory, (ENAH), Mexico City, Mexico. Photo: R. Barquera & N. Bernal.

Five centuries after Charles I of Spain authorized the transport of the first African slaves to the Viceroyalty of New Spain, the ancestry of the hundreds of thousands of abducted and enslaved people forms an integral part of the genetic and cultural heritage of the Americas. The origins and experiences of those enslaved individuals, however, remains largely unknown.

This study, published in Current Biology, applies an interdisciplinary approach to explore the backgrounds and living conditions of three African individuals recovered from a mass grave on the grounds of Hospital Real de San José de los Naturales, an early colonial period hospital in Mexico City officially devoted to the indigenous population. Dated to the 16th century, these individuals tell the stories of some of the earliest people forcefully relocated to the Americas in the early years of European colonialism.

Multidisciplinary study reconstructs the lives of early enslaved Africans

The three individuals in the study first caught the attention of the team with their distinct dental modifications, a filing of the upper front teeth consistent with cultural practices recorded for African slaves which can still be observed in some groups living in western Africa today.

"Combining molecular biology, isotopic data and bioinformatic tools with classical historical, anthropological and archaeological evidence allowed us to gain insights into the life history of some of the earliest African slaves in the Americas," says Johannes Krause, director of the Department of Archaeogenetics at the Max Planck Institute for the Science of Human History (MPI SHH).

Genetic analysis showed that all three individuals shared a Y-chromosome lineage that is highly prevalent in Sub-Saharan Africa, and which is now the most common lineage among African Americans. Combined with isotopic data showing that all three individuals were born outside of Mexico and osteobiographies showing years of physical abuse before premature death, the findings suggest that these individuals may be among the first Africans to reach the Americas after being abducted in their homelands in Sub-Saharan Africa.

"Modern lab techniques allow us to gather incredible amounts of data from very little biological material. The amount of information we can give back to archaeologists, anthropologists and society today using only one tooth from each individual is something we could only dream about just ten years ago," says Rodrigo Barquera, the study's lead author.

The spread of pathogens across the Atlantic

Researchers from all three departments and one independent group of the MPI SHH and two laboratories from the ENAH combined their expertise to tell the story of these individuals, examining not only their ancestry and origins, but also their health status and life experiences. The team was able to reconstruct two full pathogen genomes from tooth samples. One individual was infected with a strain of the Hepatitis B virus (HBV) typically found in western Africa today.

"Although we have no indication that the HBV lineage we found established itself in Mexico, this is the first direct evidence of HBV introduction as the result of the transatlantic slave trade," says Denise Kühnert, leader of the tide research group at MPI SHH. "This provides novel insight into the phylogeographic history of the pathogen."

Another individual was infected with Treponema pallidum pertenue which causes yaws, a painful infection of the bones similar to syphilis that affects joints and skin. The same strain of yaws has been previously identified in a 17th century colonist of European descent, suggesting the establishment of this disease lineage of African origin in the early colonial population of Mexico.

"This study sheds light into early cases of yaws after the European colonization of the Americas," says Aditya Kumar Lankapalli of MPI SHH. "Future studies should focus on understanding the transmission and introduction of this pathogen to the Americas. More high-coverage ancient Treponema genomes will allow us to get a better understanding of the coevolution and adaptation of this pathogen to humans."

"Interdisciplinary studies like this will make the study of the past a much more personal matter in the future," adds Thiseas C. Lamnidis. The authors hope that future interdisciplinary endeavors will continue to provide insights into the lives, deaths and legacies of historically oppressed groups whose stories have been buried, often in mass graves.

Credit: 
Max Planck Institute of Geoanthropology

Older men with sarcopenia are more likely to develop diabetes over time

WASHINGTON--Older men who have lower lean body mass as they age are more prone to developing diabetes, while similar findings were not found in older women, according to a new study published in the Journal of the Endocrine Society.

One in four adults aged 65 and older has diabetes, making them the group with the greatest burden of diabetes. Skeletal muscle is the largest insulin-sensitive tissue in the body and plays an essential role in blood sugar regulation. Age-related muscle loss, called sarcopenia, may contribute to the development of diabetes in older adults.

"Age-related muscle loss may be an under-recognized target for interventions to prevent the development of diabetes in older adults," said the study's first author, Rita R. Kalyani, M.D., of the Johns Hopkins University in Baltimore, Md. "We found that relatively lower lean body mass with aging was related to a higher incidence of diabetes in men but not women, and partially related to body size."

The researchers studied 871 men and 984 women, with an average age of 60 years at the initial visit, from the Baltimore Longitudinal Study of Aging, who were followed up to 15 years. They used Dual X-ray Absorptiometry and found that lower lean body mass with aging is associated with incident diabetes in men but not women.

"Future studies that use more direct methods to assess skeletal muscle mass may give further insights into these relationships and the sex differences that we observed," Kalyani said.

Credit: 
The Endocrine Society

Making safe choices: It's in our DNA

image: Two pathways of DNA damage repair. Rad51 faithfully repairs DNA damage through DNA strand exchange with intact DNA (left). Rad52 causes gross chromosomal rearrangements (GCRs) through single-strand annealing (SSA) (right).

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Osaka University

Osaka, Japan - Homologous recombination is an essential process of DNA repair to maintain genomic integrity of the organism. Now, researchers from Japan have identified mechanisms that choose between alternate pathways of DNA repair to limit anomalous and deleterious chromosomal combinations that may be predisposed to cancer and genetic diseases.

In a recent study, researchers from Osaka University show that Rad52-dependent single-strand annealing (SSA) is the mechanism of homologous pairing that leads to gross chromosomal rearrangements (GCRs) at the centromere. They also identify mutations that allow this pathway to predominate in preference to the error-free Rad51 pathway.

Cells are under constant genotoxic pressure from exogenous and endogenous factors. Genome instability underlies several diseases including cancer. Consequently, DNA repair necessarily occurs thousands of times per day in each human cell to correct detrimental mutations, blockage of replication and transcription, and chromosomal breakage. Paradoxically, this recombination may occasionally cause dysfunctional GCRs.

The centromere of a chromosome is the specialized DNA sequence that links a pair of sister chromatids. Many organisms, including humans and fission yeast (Schizosaccharomyces pombe), have repetitive sequences at centromeres. This renders them vulnerable to isochromosome formation —dysfunctional mirror-images—due to a specific type of recombination between inverted repeats. In experiments conducted on fission yeast, the researchers demonstrated that DNA replication mechanisms reduce the occurrence of GCRs by inhibiting SSA activity at centromeres.

"At centromeres, Rad51-dependent recombination predominates and other recombination pathways appear to be inhibited," explains Atsushi T. Onaka, lead author. "As Rad51 promotes conservative non-crossover recombination, the choice of recombination pathways is important for suppressing GCRs. This recombination predominantly occurs between inverted repeats, thereby suppressing formation of isochromosomes. However, how Rad51-dependent recombination predominates at centromeres is unknown."

Jie Su, co-lead author, explains further. "We showed that Rad52-dependent SSA is the mechanism of homologous pairing that leads to centromeric GCRs. The rad52-R45K mutation impairs SSA activity of the Rad52 protein and reduces isochromosome formation in rad51 mutant cells. To better understand how Rad52-dependent SSA is suppressed at centromeres, we performed a genetic screen and found that specific mutations in replication fork proteins and a fork protection complex increase Rad52-dependent SSA at centromeres and isochromosome formation."

"Our research implicates DNA replication machinery in the recombination pathway choice at centromeres, preventing Rad52-dependent SSA that results in GCRs," explains senior author Takuro Nakagawa. "This knowledge identifies Rad52 as a promising target in treating cancer."

Credit: 
Osaka University

Novel method produces life-saving T cells from mesenchymal stromal cells

image: STEM CELLS focuses primarily on the functional and mechanistic aspects of stem cell biology and the potential of different types of stem cells for therapeutic applications. The journal publishes key, well-controlled advances in stem cell clinical trials and mechanism-based manuscripts with definitive conclusions.

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AlphaMed Press

Durham, NC - A new study released today in STEM CELLS suggests for the first time that regulatory T-cells (Treg) induced by mesenchymal stromal cells can yield an abundant replacement for naturally occurring T-cells, which are vital in protecting the body from infection. Led by Rita I. Azevedo, Ph.D., at the Instituto de Medicina Molecular in Lisbon, Portugal, this study could yield new treatments for a long list of chronic inflammatory diseases that includes everything from cancer and asthma to inflammatory bowel disease, rheumatoid arthritis and more.

"Treg play a critical role in immune tolerance," Dr. Azevedo said. "In stem cell transplantation to treat leukemia and other blood diseases, for example, lower Treg counts are associated with the development of chronic graft-versus-host disease. However, Treg are very scarce. Finding alternative sources of stable Treg induction might produce a large enough number for effective treatment uses."

Mesenchymal stromal cells (MSCs) have been suggested as one way to achieve this. These multipotent progenitor cells, which can be isolated from a wide range of adult and postnatal tissues, are able to differentiate into diverse cell types. And like Treg, MSCs constitute an important immunoregulatory population by inhibiting both innate and adaptive immune responses.

"But thus far, the potential of MSC to recruit Treg has been poorly understood," Dr. Azevedo said.

Previous studies suggest that MSC-mediated immunomodulation may be partly driven by Treg induction and/or expansion. However, these reports have not assessed Treg yield in terms of absolute counts, nor characterized the resulting Treg-like cells in detail. In the present study, Dr. Azevedo's team sought to determine whether MSC are able to induce and/or expand Treg in vitro, as well as the mechanisms of Treg enrichment by MSC.

To conduct the study, they collected human peripheral blood mononuclear cells - including T-cells - from healthy donors and co-cultured them with allogeneic bone marrow-derived MSC. Fourteen days later, the results showed an increase in the count and frequency of Treg cells -- four- and six-fold, respectively.

The MSC-induced Treg-like cells resemble Treg functionally, and importantly, their DNA methylation profile closely resembles that of natural Treg, indicating that this population is stable. DNA methylation is an important component in numerous cellular processes, including embryonic development. Errors in the methylation have been linked to several human diseases.

"Our data sheds new light into the origin, functional potential and stability of MSC-induced Treg-like cells, which are key features for their potential applicability in the clinical setting." Dr. Azevedo concluded. "The co-administration of MSC and Treg might have the potential to constitute a more effective cellular therapy approach by harnessing the suppressive capacity of both these immunomodulatory populations."

"This is an exciting advance", said Dr. Jan Nolta, Editor-in-Chief of STEM CELLS. "Dr. Azevedo and her team have defined important MSC-based mechanisms to induce and enrich Treg cells, which could have important future implications for the treatment of chronic diseases."

Credit: 
AlphaMed Press

Clinicians warn of the dangers of equating COVID-19 with high altitude pulmonary edema

image: COVID-19 is not high altitude pulmonary edema and to ignore this fact is harmful to patients.

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ATS

April 29, 2020 - Early reports of COVID-19 symptoms and the compelling need to quickly identify treatment options and curb the growing number of critically ill patients have led to erroneous and potentially dangerous comparisons between COVID-19 and other respiratory diseases like high altitude pulmonary edema, or HAPE.

In "COVID-19 Lung Injury and High Altitude Pulmonary Edema: A False Equation with Dangerous Implications," the authors urge clinicians to rely on scientific evidence to guide treatment. The paper was posted early online in the Annals of the American Thoracic Society.

There are some similarities between COVID-19 and HAPE as there are similarities between COVID-19 and other respiratory illnesses that cause respiratory failure: very low oxygen levels in the blood, significant difficulty breathing, the degree to which there is stiffness in the lungs, and abnormal findings on chest CT scans. However, there are fundamental differences between COVID-19 and HAPE.

"HAPE develops when people ascend to high altitude. The low oxygen levels in the atmosphere cause low oxygen levels in the air sacs of the lungs," said Andrew Luks, MD, professor of medicine in the Division of Pulmonary, Critical Care and Sleep Medicine at Harborview Medical Center and the University of Washington. "In all people, this leads the blood vessels in the lungs to constrict and raises the blood pressure in the lungs (pulmonary artery pressure). In people who develop HAPE, this response is excessive.

There is far too much vasoconstriction and far too great a rise in pulmonary artery pressure, all of which lead fluid to leak out of the blood vessels into the lung tissue, but this occurs with no inflammation."

"In lung injury due to COVID-19, the virus attacks the cells that make up the air sacs of the lungs. This leads to a big inflammatory response that damages the air sacs (alveoli), leading fluid to leak out of the blood vessels even under much lower pressures, causes the alveoli to collapse, interferes with gas exchange and makes the lungs stiffer and harder to expand than normal. "

These fundamental differences necessitate different treatment approaches. While treatment with oxygen can resolve HAPE symptoms, oxygen alone is ineffective for the lung injury associated with COVID-19. Nifedpine and acetazolamide, two medications used to treat altitude sickness, can have dangerous consequences in COVID-19 patients.

"If given to a patient with lung injury due to COVID-19, it [nifedpine] has the potential to actually worsen oxygen levels in the blood and to lower systemic or whole body blood pressure," said Dr. Luks.

Treating with acetazolamide can cause a host of problems, among them "fatigue of the diaphragm, causing the blood to become more acidic, and at high enough concentrations in the blood, impairing the transport and elimination of carbon dioxide, all of which will make patients even more short of breath."

COVID-19 has affected how the medical community shares information and what the community is learning about the disease can change quickly. Clinicians and families are looking for data to help care for patients. Dr. Luks and his co-authors warn that without careful scrutiny, misinformation can quickly spread. Now more than ever, it is critical that clinicians rely on the data accumulated over time and scientific evidence related to treating acute lung injury.

Credit: 
American Thoracic Society

Cultivating cooperation through kinship

image: Dance is a form of culturally based cooperation. It is a system of shared
self-expression and meaning in which individuals gain personal and social benefits through participation while excluding (i.e., punishing) those who would disrupt the coordination or enaction of the performance. The experience of the performers and any audience present acts deep emotional levels through established cultural symbols and their associated feelings.

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Painted by: Liane Gabora

While the capability for organisms to work together is by no means novel, humans possess an unparalleled capacity for cooperation that seems to contradict Darwinian evolutionary principles. Humans often exhibit traits--such as sympathy, loyalty, courage, and patriotism--that prioritize collective well-being over individual fitness, and often cooperation occurs among individuals with no shared biological relation. This behavior, likewise, adapts in response to changing conditions, demonstrating the flexible nature of human cooperation.

In "Identity, Kinship, and the Evolution of Cooperation," published in Current Anthropology, Burton Voorhees, Dwight Read, and Liane Gabora argue that humans' tendency toward these cooperative traits--or ultrasociality--sets them apart. Voorhees, Read, and Gabora assert that components of human cooperation--especially cooperative behavior between unrelated individuals--are unique, and the authors suggest that existing theories lack explanations for how this distinctly human shift to cooperative behavior arose and how cooperation is maintained within a population.

Expanding upon the current literature, Voorhees, Read and Gabora present a theory that attributes unique elements of human cooperation to the cultivation of a shared social identity among members of a group. The authors propose that evolutionary developments in the brain enabled the acquisition of this shared identity by providing humans with the capability for reflective self-consciousness. Reflective self-consciousness allows an individual to fully recognize their own personhood and point of view. In turn, recognition of their own experiences aided humans in identifying similar mental states in others, allowing humans to view themselves as part of a collective unit.

The authors argue that cultural idea systems such as kinship systems, provided the necessary framework for cultivating this unique degree of cooperation among humanity. Unlike culture-gene theories where group characteristics develop from individual traits, cultural idea systems provide a top-down, organizational structure that establishes expectations of behavior among individuals in a group and leads individuals to view other members as kin. As individuals are indoctrinated, or enculturated, in these systems, their worldviews are shaped. They develop an understanding of accepted cultural norms, how to interpret their environment and their experiences, and how to interact with one another. In particular, the authors assert that enculturation fosters feelings of obligation toward cultural kin.

Emphasizing linkages between psychology and behavior, the authors suggest this obligation deterred individuals from deviating from accepted behaviors and in turn, sustained cooperative behavior within the group. A shared social identity provided beneficial advantages. As a result, the authors propose that an association developed between an individual's social identity and their survival instincts. In kinship systems, emotions are experienced within a specific cultural context, resulting in culture-laden mental feelings that prompt behavior. Voorhees, Read, and Gabora likewise argue that external cues contradicting existing culture-laden mental feelings can result in emotional reactions. Any behavior that diverges from cultural norms and threatens an individual's identity could be physiologically perceived as endangering their survival. Group members will feel driven to punish defectors in response. This theory can thus explain why failure to meet group obligations may evoke guilt in those who deviate from cultural expectations.

Credit: 
University of Chicago Press Journals

HRM practices a predictor for business resilience after layoffs

As retrenchments continue to cloud the foreseeable future of businesses worldwide, new research from the University of South Australia, the University of Melbourne and RMIT indicates that some businesses will fare better than others - and it's all dependent on their type of human resource management system.

In a new study published in the Human Resource Management Journal this week, researchers found that the ability of an organisation to recover after layoffs is directly connected to their HRM system: those that encourage participative, motivation practices will recover more quickly than those that emphasise financial incentives.

Layoffs are a dire reality, occurring recently across many industries including travel, hospitality, entertainment and retail, as well as professional services, but as UniSA researcher, Professor Carol Kulik says, HRM research delivers important insights for organisational resilience in times of hardship.

"In recent weeks we've seen many organisations tighten their belts to stay afloat, with some resorting to layoffs in the hope that a 'leaner and meaner' structure will help them retain or restore a competitive edge," Prof Kulik says.

"But the challenge is, the success of a layoff depends on the surviving staff, who inevitably must work harder as the workforce shrinks and, as a result, organisational performance drops.

"Our research shows that businesses with strategic HRM systems focussed on participation and collaborative communication practices are far stronger in times of adversity. This is because the nature of these HRM practices have developed a culture of trust. As a result, employees are more likely to feel that they share the responsibility and step up to help management move the organisation forward.

"On the other hand, organisations that place a heavy emphasis on financial incentives ¬- that is pay for performance - create a culture of risk¬. Here, businesses align workers' financial interests with those of the company, encouraging employers to 'take a risk' that their investment (in working hard) will pay off and they will share in the company's profits.

"Layoffs in these situations tell employees that their risks will not pay off, so when incentives drop, so too does performance."

Drawing from five years of WERS data (Britain's flagship survey of employment relations) which included 745 workplaces, the team used cluster analysis to identify workplaces with high-performance workplace systems (HPWS) - systems that use integrated HRM practices such as rigorous selection, training, and teamwork to motivate and maintain high performance - and regression analyses to compare the performance effects of different employment systems.

The researchers found that 60 per cent of workplaces had HPWS and that these outperformed businesses with less-strategic HRM practices. Additionally, it highlighted the benefit of collaborative HRM practices as opposed to financially driven HRM practices.

"High-performance workplace systems send clear messages to employees about what the employer values, motivating employees to focus on those particular parts of their performance, so these produced higher performance than those without such clarity," Prof Kulik says.

"But, when we assessed the impact of these systems after significant layoffs, we found that businesses that emphasised financial incentives experienced bigger drops in performance, and even five years later, hadn't yet recovered.

"For organisations, this research shows how important it is to send clear, strategic messages to employees as these will guide and increase performance.

"Yet for those who link HRM practices with financial incentives, there's an extra warning: while financial incentives work when it's business as usual, in times of hardship the short- and long-term performance of those organisations is likely to suffer."

Credit: 
University of South Australia

Understanding the diversity of cancer evolution based on computational simulation

image: A-D) Four main evolutionary modes in cancer. Red stars represent normal driver mutations such as single nucleotide mutations. A green star represents large-scale genetic alterations at the chromosomal or genomic level that produce copy number or structural abnormalities.
E) An evolutionary model that explains the temporal shift of the principle generating ITH during colorectal tumorigenesis.

Image: 
© 2020 IMSUT, The University of Tokyo CC-BY

Understanding the principles of cancer evolution is important in designing a therapeutic strategy. A research group at The Institute of Medical Science, The University of Tokyo (IMSUT) announced a new simulation model that describes various modes of cancer evolution in a unified manner.

"We clarified the conditions under which each of the evolutionary modes is realized by performing simulation analysis using a supercomputer. Our findings have allowed us to explain the underlying principles of the evolutionary diversity of cancer." said lead scientist Atsushi Niida, Senior Assistant Professor, Laboratory of Molecular Medicine, Human Genome Center of IMSUT.

To build a unified evolutionary simulation model

Cancer can be regarded as a disease of evolution, which results from natural selection of cells with high proliferative and malignant potential, following the accumulation of mutations in their genomes. Moreover, because cancer has a high evolutionary potential, it easily adapts to treatment-related changes in its environment and acquires therapeutic resistance (*1),

Previous genomic studies have shown that cancer evolution can be roughly divided into four modes of evolution. However, it has remained unclear what conditions give rise to each mode. Therefore, the research group have built a unified evolutionary simulation model that can recapitulate a variety of evolutionary modes.

By performing massively parallel simulation(*2) with various conditions on SHIROKANE, a supercomputer at IMSUT, the research group determined the conditions under which each evolution mode is generated. By providing a mathematical basis for understanding cancer evolution, this study is expected to contribute to the understanding of therapeutic resistance in cancer and the development of novel therapeutic strategies.

Various mathematical principles that explain the evolution of cancer

Classically, cancer evolution has been regarded as a process of evolution, in which normal cells evolve step-wise into a homogeneous cell population with high malignancy by serially acquiring driver mutations(*3) that favor cell growth and survival while undergoing natural selection (Figure 1A).

However, in recent years, multi-region sequencing(*4), which analyzes DNA samples obtained from multiple regions of a tumor, has demonstrated intratumor heterogeneity (ITH)(*5); that is, multiple clones with different mutations are generated during the course of cancer evolution and coexist in a single tumor. Also, depending on the types of cancers, driver mutations present only in a fraction of cells contribute to ITH; that is, natural selection appears to shape ITH (FIG. 1B).

On the other hand, it has been found that ITH can be shaped by the accumulation of neutral mutations(*6) that do not affect the growth and survival of cells; that is, ITH can be generated by neutral evolution (FIG. 1C). The evolutionary principle underlying ITH has not only varied among cancer types, but Niida and colleagues have also found that a temporal shift occurs during colorectal tumorigenesis (Saito et al.,2018); that is, it has been found that, in early lesions, ITH is shaped by natural selection while in advanced cancer, ITH is shaped by neutral evolution. Also, in contrast to the gradual evolution that results from the stepwise accumulation of single nucleotide mutations as assumed above, punctuated evolution has attracted attention. This is an evolutionary mode in which large changes occur over a short time at the chromosomal and genomic levels, such as copy number changes and structural abnormalities, explosively expanding from a few initial cells (Fig. 1D).

Thus far, four evolutionary modes have been proposed, but there are many unclear points concerning under what conditions these modes occur. Simulation using an agent-based model is considered to be a useful tool for understanding the principle of cancer evolution. The agent-based model assumes the components of a system called an agent, and specifies rules for the autonomous behavior of the agent itself and the interactions between agents and the environment.

Viewing each cell as an agent, ITH can be easily represented by the difference in the internal state of each agent. Niida and colleagues have recently developed MASSIVE, a new methodology of parameter sensitivity analysis(*7), which examines the dynamics of agent-based simulations (Niida et al., 2019). MASSIVE takes an approach completely different from conventional parameter sensitivity analysis methods; it makes it possible to intuitively search a large parameter space by combining massively parallel computing with interactive data visualization.

Based on the above, in order to clarify the conditions under which the above-mentioned four different evolution modes are realized, we have constructed a unified evolution simulation model that can recapitulate various evolution modes using an agent-based model. Parameter sensitivity analysis utilizing MASSIVE was performed on SHIROKANE, a supercomputer of IMSUT. They found that linear evolution occurs when strong driver mutations are assumed, while ITH is generated by natural selection when the driver mutations are weak. Moreover, the simulation revealed that the generation of ITH by neutral evolution requires a high neutral mutation rate, and the presence of cancer stem cells also contributes to neutral evolution by promoting the accumulation of neutral mutations.

Punctuated evolution could also be reproduced by assuming an explosive driver gene that enables cells to overcome the resource limitation required for cell proliferation. Furthermore, it was shown by simulation that punctuated evolution triggers the above-described temporal shift of the principle underlying ITH from natural selection to neutral evolution in colorectal tumorigenesis (Fig. 1E). This result also helps us understand that each mode works not as discrete, exclusive modes but rather blend continuously as a series of phases of cancer evolution.

The results of all the simulation analyses in this research can be searched interactively at https://www.hgc.jp/~aniida/canevosim/index.html.

Contributing toward a deeper understanding of therapeutic resistance in cancer

"In this study, we clarified the principle underlying the diversity of cancer evolution by simulation analysis using a supercomputer. Since cancer has a high evolutionary potential, it adapts to the environment changed by therapy and easily acquires therapeutic resistance, so understanding the evolutionary principle of cancer is an important problem for designing therapeutic strategies." Niida emphasized

By providing a mathematical basis for understanding cancer evolution, this study is expected to contribute to the understanding of therapeutic resistance in cancer and the development of novel therapeutic strategies.

Credit: 
The Institute of Medical Science, The University of Tokyo

GSA's journal's add two articles on COVID-19 and aging; plus webinar on confronting ageism

The Gerontological Society of America's highly cited, peer-reviewed journals are now publishing scientific articles on COVID-19. The following were published between April 21 and 29; all are free to access:

A Frail Health Care System for an Old Population: Lesson from the COVID-19 Outbreak in Italy: Editorial in The Journals of Gerontology, Series A: Biological Sciences and Medical Sciences by Stefano Volpato, MD, MPH, Francesco Landi, MD, PhD, and Raffaele Antonelli Incalzi, MD, PhD, on behalf of the Italian Society of Gerontology and Geriatrics

After the COVID-19 Pandemic: The Next Wave of Health Challenges for Older Adults: Letter to the editor in The Journals of Gerontology, Series A: Biological Sciences and Medical Sciences by Jennifer A. Schrack, PhD, MS, Amal A. Wanigatunga, PhD, MPH, and Stephen P. Juraschek, MD, PhD

*View GSA's Webinar on Responding to Ageism During COVID-19*

On April 21, GSA hosted "Reframing the Response to COVID-19: Applying Reframed Language to Counteract Ageism," a webinar that featured strategies for connecting COVID-19 and aging without perpetuating ageist tropes. The program is now archived on YouTube; the presentation slides can also be downloaded. The presenters offer ways that we can respond using empirically-supported narratives developed by the FrameWorks Institute for the Reframing Aging Initiative and other projects to frame the public discourse on social and scientific issues.

Credit: 
The Gerontological Society of America

Study helps arboreta, botanical gardens meet genetic diversity conservation goals

image: The Morton Arboretum researcher Sean Hoban, PhD, collecting leaves of the threatened shinnery oak (Quercus havardii) for analysis. (©2020 The Morton Arboretum. All rights reserved.)

Image: 
The Morton Arboretum

LISLE, Ill. (April 30) - In a groundbreaking study, an international team of 21 scientists led by Sean Hoban, PhD, Conservation Biologist at The Morton Arboretum in Lisle, Illinois, evaluated five genera spanning the plant tree of life (Hibiscus, Magnolia, Pseudophoenix, Quercus and Zamia) to understand how much genetic diversity currently exists in collections in botanical gardens and arboreta worldwide.

The study concluded that many plant collections currently fall short of ambitious targets for conserving genetic diversity of rare species. "The research findings demonstrate that gardens and arboreta are needed more than ever to safeguard global plant diversity," Hoban said. "This information will help bring more coordinated focus and attention to these gaps."

The team also studied how much genetic diversity is necessary to safeguard a species, and how many individuals are needed to conserve a rare taxa. The Morton Arboretum's Murphy Westwood, PhD; Andrew Hipp, PhD; and curator Matt Lobdell also participated on the team.

The study, funded through an Institute for Museum and Library Services grant and published April 29 by Proceedings B, investigated the genetic diversity of plant collections of a wide range of species in more than 60 botanical gardens and arboreta worldwide in an effort to better understand how to protect threatened species from extinction amidst the current biodiversity crisis.

After analyzing data from 3,000 individual plants from nine species and two subspecies, the researchers found that even under optimistic assumptions, most (eight of 11) taxa fell short of conservation targets for genetic diversity.

"We need to do a better job as a global botanical garden community representing the genetic, ecological and trait diversity of species in collections to safeguard them for the long-term," Hoban said. "If we have conserved too little genetic variation, the species may be unable to adapt to future environmental changes, including climate change, or to new challenges like pests and disease."

Findings and solutions

Capturing the full range of genetic diversity in a species or subspecies can greatly influence its likelihood of surviving in a rapidly changing world. It also provides data needed to open a new era of more effective botanical garden conservation, helping experts to conserve taxa and prioritize resources and capacity. Hoban noted that the results have relevance to timely conservation issues, including global efforts to achieve the 2020 goals of the Global Strategy for Plant Conservation (GSPC), which includes conserving sufficient genetic diversity in botanical collections and ensuring that plant material is available to restore threatened populations in the wild.

"The global botanic garden and arboretum community is the single strongest force for plant conservation in the world," said Paul Smith, PhD, Secretary General of Botanic Gardens Conservation International - the largest plant conservation network in the world. "Armed with the results and recommendations of this groundbreaking study, we can ensure that no plant species becomes extinct by increasing the genetic variability, adaptability and conservation value of our living collections for the future of people and the planet."

The authors recommend that plant collectors and curators make optimal use of limited garden space by calculating how many specimens are needed to capture the desired level of genetic diversity and sampling accordingly, while adhering to ideal sampling practices. The number of specimens in a collection needed to represent the genetic diversity in the wild can vary greatly between taxa. In this study, it varied from a few dozen to more than 200 trees. Finally, the researchers concluded that additional plant collection and exploration is needed in order to ensure success. By using best practices to collect from the right plants within the right taxa, and planting them in gardens, up to twice as much genetic diversity can be captured.

The messages of the study are twofold: Collections in botanical gardens should be tailored to the individual taxon, and gardens can make progress towards new, general rules of thumb for high conservation value in botanic gardens and arboreta, making wise use of resources for effective safeguarding.

Credit: 
The Morton Arboretum