Culture

Scientists highlight potential of exposome research

Over the last two decades, the health sciences have been transformed by genomics, which has provided insights into genetic risk factors for human disease. While powerful, the genomics revolution has also revealed the limits of genetic determinants, which account for only a fraction of total disease risk. A new article in the journal Science argues that a similar large-scale effort is needed to ensure a more complete picture of disease risk by accounting for the exposome, defined as our cumulative exposure to environmental agents such as chemical pollutants.

The article by researchers at Columbia University Mailman School of Public Health; Utrecht University, the Netherlands; University of Luxembourg; and Northeastern University reviews progress in assessing the components of the exposome and its implications on human health.

"Our genes are not our destiny, nor do they provide a complete picture of our risk for disease," says senior author Gary Miller, PhD, Vice Dean for Research Strategy and Innovation and professor of environmental health sciences at the Columbia Mailman School. "Our health is also shaped by what we eat and do, our experiences, and where we live and work."

"Less than half of the nongenetic risk burden for disease is accounted for, suggesting the existence of environmental risk factors, exposure to which may largely be preventable," says first author Roel Vermeulen, Professor of Environmental Epidemiology and Exposome Science at Utrecht University. "With growing recognition of the important role nongenetic factors play in disease, we need a coordinated and international effort to characterize the exposome at a scale comparable to that of the human genome."

What Is the Exposome?

The exposome was conceived by the scientist Christopher Wild in 2005 as a way to represent the environmental, nongenetic, drivers of health and disease. These exposures are not restricted to the thousands of chemicals that enter our bodies through the air, water, or food, for example, but also our body's response to our environment, including the built environment and social circumstances, through inflammation, oxidative stress, infections, and gut flora, for example.

Embracing Complexity

Traditionally, our understanding of the health effects of chemicals has come from epidemiological and toxicological studies that analyze one or a small number of pollutants at a time. "However, our exposures are not a simple sum of a handful of chemicals," the authors write. To capture a fuller picture of environmental exposures, scientists are beginning to employ environment-wide association studies (EWAS), the exposome equivalent of genome-wide association studies (GWAS). Complementing GWAS, EWAS studies take advantage of high-resolution mass spectrometry (HRMS) to measure small molecules originating in the environment, such as air pollution, pesticides, plasticizers, and flame retardants, as well as nutrients and biological metabolites.

"A reductionist approach might isolate the role of a single variable, but it will inadequately capture the complexity of the exposome," the authors write. "The challenge in understanding the role of the exposome on our health lies not only in the large number of chemical exposures in our daily lives, but also in the complex ways that they interact with cells."

Scaling Up

Among the challenges to exposome research are that enrollment in studies of nongenetic environmental exposures remains relatively low. Sample sizes in excess of 100,000 are needed to explain a substantial portion of the genomic heritability of common chronic diseases. The authors posit that similar or even greater sample sizes are required for future environmental studies. A step in that direction, efforts are underway to create a Human Exposome Project representing environmental and biological exposures for tens of thousands of people, large enough to identify the most prevalent and strongest chemical risk factors, although larger studies are needed to understand the impact of many exposome factors in combination. In addition to sample size, the authors call for improvements in screening technology and data resources to identify associations; network theory to elucidate the constellation of the chemical environment and its biological consequences; and replication in independent studies and the use of methods to establish causation.

Exposome Research for Policy and Personalized Medicine

Large-scale exposome studies will give regulatory bodies new information on those chemicals that have the largest adverse effects on health. "If systematic analysis reveals major adverse effects on human health from exposure to currently approved or potential replacement chemicals, then those compounds should be removed from the marketplace," the authors write. Moreover, data on the effects of classes of chemicals on specific biological pathways known to be perturbed could help in the design of new compounds with minimal impact on human health and the environment. "Current research approaches and regulatory policies fail to address the chemical complexity of our world," the authors write.

In the realm of medicine, more complete information on the impact of nongenetic factors and chemical exposures would also enable the creation of an exposome risk score (ERS) akin to the polygenic risk score (PRS) which could give individuals and their clinicians a better understanding of their likelihood of developing certain diseases.

"Consolidating knowledge garnered from GWAS [genome-wide association studies] and EWAS [environment-wide association studies]," the authors conclude, "would allow us to map the gene and environment interface, which is where nature meets nurture and chemistry meets biology."

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Columbia University's Mailman School of Public Health

How we learn is a quantum-like manner!

image: An illustration of connections in a human brain. An illustration of connections in a human brain.

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ILLUSTRATION BY HOLLY WILDER/USC

Imagine that you met a charming girl in school. She is an excellent student who concerns about the world welfare and is anti-war and anti-nuclear. Which do you think she is most likely to become in the future, a bank counter clerk, or, a bank counter clerk and feminist? Surveys show that most people think it's easy and choose the latter. Their choice is right. However, according to classical probability theory, the probability of the former is definitely higher than the latter because the former contains the latter. That paradox calls for more modeling to be established to better fit facts.

Prof. ZHANG Xiaochu and his group developed new frameworks to better explain such human decision-making behaviors using the concept of quantum, and their result is published in Nature Human Behaviour in January 2020. They established the quantum reinforcement learning framework for human decision-making applying concepts from quantum probability theory. For example, they chose quantum probability amplitude rather than classical probability to describe the tendency of selecting a specific action. In this way they proposed quantum models that are comparable to the best classical models. Furthermore, they checked the functional magnetic resonance imaging (fMRI) data of human brain playing the Iowa Gambling Task. They were surprised to find that several important internal-state-related variables involved in their models are represented in the medial frontal gyrus (MeFG), which is important for human learning and decision-making. This shows a unique quantum-like neural mechanism for how the internal state is changed due to external information. In other words, this implies that how human brain works is a quantum-like manner, which is worthy of further research.

These models bring people new perspectives on understanding how human brains run. It's inspired by machine learning development and is possible to elevate the efficiency of machine learning. In the meantime, the quantum-like mechanisms in the brain are still not fully understood. This deserves additional studies and is likely to change the history.

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University of Science and Technology of China

Reelin reverts the main pathological processes related to Alzheimer's and other tauopathy

image: Image of a primary neuronal cell culture with detection of MAP2 dendritic marker (red) and Neurofilament axon marker (green).

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UNIVERSITY OF BARCELONA

Promoting the signalling pathway of reelin -an essential extracellular protein for the neuronal migration and synaptic plasticity- could be an effective therapeutical strategy to counterbalance the main cognitive, biochemical and behavioural alterations seen in Alzheimer's and other pathologies associated with Tau protein, as shown in a new study with animal models -published in the journal Progress in Neurobiology.

The study proves the determining role of reelin in the modulation of pathological processes associated with Alzheimer's and other tauopathies (accumulation of amyloid plaques, aberrant distribution of Tau phosphorylated, synaptic dysfunction and memory loss), and opens a new perspective to design future therapeutical targets and drugs to fight these disorders.

The first author of this study is the researcher Daniela Rossi, and it is led by Eduardo Soriano and Lluís Pujadas, members of the Faculty of Biology and the Institute of Neurosciences (UBNeuro) of the University of Barcelona, the Network Center for Biomedical Research in Neurodegenerative Diseases (CIBERNED) and the Vall d'Hebron Research Institute (VHIR).

Other participants are the experts Agnès Gruart, José M Delgado and Gerardo Contreras-Murillos (University Pablo de Olavide), Jesús Ávila (Center for Molecular Biology Severo Ochoa, CBM), and Ashraf Muhaisen (UB-UBNeuro-CIBERNED-VHIR). This new study on neurosciences counts on the support of the Research Challenges program (Biomedicine) from the Spanish Ministry of Economy and Competitiveness (MINECO) and La Marató de TV3.

Reelin, an essential protein for brain plasticity

Alzheimer's disease is a neurodegenerative disease known for the loss of connection between neurons and neuronal death. It is largely linked to the creation of senile plaques (formed by the amyloid-beta peptide, or Aß), and the presence of neurofibrillary balls (insoluble deposit of Tau).

In the adult brain, the loss of reelin has been related to an increase in the phosphorylation of Tau protein -a factor which is related to the microtubules mainly expressed in neurons- which ends up in neurofibrillary ball form -typical from Alzheimer's.

Therefore, the different states of phosphorylation and dephosphorylation of Tau represent a determining factor in the stability of the cell cytoskeleton and, as a result, of the synaptic and dendritic stability. Hyperphosphorilation and accumulation of Tau causes neuronal death.

In this context, the function of the reelin protein to promote synaptic plasticity and reduce Tau phosphorylation was considered a potential mechanism to reduce the consequences of the neurodegenerative process and protect the brain from neuronal damage.

New beneficial effects of reelin in animal models with tauopahy

In previous studies, experts had affirmed the alteration of reelin in Alzheimer's disease and its role in intracellular signalling pathways related to neuronal survival and the physiology of the adult brain. Researchers had described the active role of reelin in the recovery of cognitive functions and the reduction of fibers of the Aß peptide in vitro and amyloid deposit in the brain in animal models with Alzheimer's (Pujadas et al. Nature Communications, 2014).

The published study in Progress in Neurobiology describes new molecular data on the signalling pathway of reelin and reveals how this protein can reverse the main pathological affectations of Alzheimer's at different levels in animal models affected by tauopathies. In particular, the results reveal that overexpression of reelin is able to modulate levels of phosphorylation of the Tau protein in in vivo models.

Moreover, the in vitro studies confirm the ability of reelin to modulate the anomalous distribution of neurofilaments and Tau protein in dendrites, which is shown in the first phases of these neuropathologies. Last, regarding the cognitive and physiological fields, overexpression of reelin revealed an improvement of deficits that affected a new animal model of tauopathy.

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University of Barcelona

Results of long-term study could help identify children at risk of future type 2 diabetes

Researchers at the University of Plymouth and Nestlé have revealed new insights into the factors that predispose children to developing type 2 diabetes in adult life.

The findings have emerged from a unique study, EarlyBird, that followed 300 healthy children in Plymouth, UK, for 15 years to determine who would become at risk of developing type 2 diabetes, and why.

The EarlyBird researchers monitored the children from five years of age to early adulthood to explore how the metabolism changes during growth. The findings, appearing in a series of peer-reviewed scientific publications, have shed new light on the biological and physiological factors that are relevant for metabolic health in childhood.

The latest results, published in Diabetes Care (doi: 10.2337/dc19-0806), show that the earliest event leading to pre-diabetes (the earliest signs of diabetes) is dysfunction of the pancreatic beta-cell, independent of body weight. Beta-cells in the pancreas produce insulin, the hormone that regulates blood sugar levels. The study also showed that this beta-cell dysfunction was associated with the presence of genetic factors previously associated with type 2 diabetes in adults.

This discovery could lead to the early identification of children that are at high risk of future type 2 diabetes.

Jon Pinkney, Professor of Endocrinology and Diabetes in the University of Plymouth's Peninsula Medical School and Honorary Consultant Physician in Endocrinology and Diabetes at University Hospitals Plymouth NHS Trust said: "The rapidly rising prevalence of type 2 diabetes is one of the biggest global health challenges, and there is an urgent need to develop effective strategies for early intervention and prevention.

"The research partnership between University of Plymouth and Nestlé has shown how the risks of future type 2 diabetes can be predicted in childhood. This opens up the possibility of individualised advice and early intervention to reduce the risks of future type 2 diabetes".

"In this study we show that beta-cell dysfunction is an early event in the onset of pre-diabetes in children and that this effect is body weight independent", said François-Pierre Martin, an expert in metabolism who led the collaboration at Nestlé Research. "However, we also report in this study that subsequent weight gain during puberty aggravates the progression from pre-diabetes to diabetes. This stresses the importance of lifestyle and nutritional interventions in childhood to reduce the risks to develop diabetes."

Jörg Hager, a genetics expert at Nestlé Research who designed the genetic part of the study said: "Our research has important implications for potentially identifying children at risk of developing pre-diabetes through genetic markers. The new findings will allow us to develop new nutritional approaches that target the insulin response to a meal, and the body's ability to regulate blood sugar level."

Begun in the early 2000s, when the obesity epidemic was still in its infancy and the idea that children could develop type 2 diabetes almost unheard of, EarlyBird was able to develop strong relationships between families and researchers and retain a high proportion of children over the course of the study.

The detailed metabolomic and genetic data collected over such a long period of childhood are unique. As a consequence, researchers have been able to make a number of vital discoveries about the relationships between lifestyle, genetics and health.

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University of Plymouth

Fuel efficient tech may threaten climate, public health

New automotive technology that promises enhanced fuel efficiency may have a serious downside, including significant climate and public health impacts, according to research from the University of Georgia College of Engineering.

The gasoline direct injection (GDI) engine is one of the most prominent technologies car manufacturers adopted to achieve the fuel economy and carbon dioxide emission goals established in 2012 by the U.S. Environmental Protection Agency. The market share of GDI-equipped vehicles increased from 2.3% in model year 2008 to 51% in model year 2018. The EPA projects 93% of vehicles in the U.S. will be equipped with GDI engines by 2025.

While this technology is credited with boosting fuel efficiency and reducing CO2 emissions, GDI engines produce more black carbon aerosols than traditional port fuel injection engines. A strong absorber of solar radiation, black carbon exhibits significant climate warming properties.

In a study published this month in the journal Environmental Science and Technology, a team of researchers at UGA predicts the increase in black carbon emissions from GDI-powered vehicles will fuel climate warming in urban areas of the U.S. that significantly exceeds the cooling associated with a reduction in CO2. In addition, they believe the shift will nearly double the premature mortality rate associated with vehicle emissions, from 855 deaths annually to 1,599. The researchers estimate the annual social cost of these premature deaths at $5.95 billion.

"Even though emissions from gasoline vehicles constitute a small fraction of the black carbon in the atmosphere, the vehicle emissions are concentrated in regions with high population densities, which magnifies their effect," said Rawad Saleh, an assistant professor in UGA's School of Environmental, Civil, Agricultural and Mechanical Engineering and the study's principal investigator.

The increase of black carbon is an unintended consequence of the shift to GDI-equipped vehicles that some scientists suspected was based on experimental data, according to Saleh. He says the UGA study is the first to place these experimental findings in a complex modeling framework to investigate the trade-off between CO2 reduction and an increase in black carbon.

While previous research has reported the shift to GDI engines will result in net benefits for the global climate, the UGA researchers say these benefits are rather small and can only be realized on timescales of decades. Meanwhile, the negative impact of black carbon can be felt instantaneously.

"Our research shows the climate trade-off is much different on the regional scale, especially in areas with high vehicle densities. In these regions, the climate burden induced by the increase in black carbon dominates over the climate benefits of the reduction in CO2," said Saleh. "The study concludes the social cost associated with the acute localized climate burden and public health impacts induced by GDI vehicles largely overweigh their marginal global climate benefits."

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University of Georgia

Immune system cells contribute to the invading capacity of brain tumours

image: Immune system cells contribute to the invading capacity of brain tumours

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INc-UAB

In a study published in Brain Communications, a new Open Access publication of the well-known journal Brain, the team led by Carlos Barcia, researcher at Institut de Neurociències of the Universitat Autònoma de Barcelona (INc), analysed the role of immune cells in the expansion of glioblastoma, the most aggressive brain tumour. The study is a collaborative effort with the General Hospital in Valencia, and part of Elena Saavedra's doctoral thesis.

The research shows for the first time that microglia and macrophages, cells of the immune system, facilitate the invasive capacity of glioblastoma by clearing the necrotic areas of the tumour while ignoring tumour cells in its niche of invasion.

This invasive niche, which is the part of the tumour that comes into contact with the healthy tissue, is shaped like a pseudopalisade and is poorly irrigated by blood vessels. This results in a lack of oxygen -hypoxia-, which causes, on the one hand, that the tumour cells escape and invade healthy tissue, and on the other, the creation of a necrotic area inside the tumour. Researchers show, in this study, that microglia and macrophages travel to these hypoxic areas and only clean dying tumour cells, facilitating tumour growth and expansion.

"The importance of this work is that we observed for the first time the presence of immune system cells in these particular tumour's invasive areas, and also that the phagocytic capacity of immune cells is not lost and could be trained to facilitate the removal of tumour instead of helping its growth" says Carlos Barcia.

The next step, then, is to study how microglia cells and macrophages could be trained, through immunotherapy or other strategies, to not play in favour of the tumour, but to contribute to its elimination.

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Universitat Autonoma de Barcelona

Women-only business groups marginalize and fail to empower members

Women-only business networks fail to boost female entrepreneurship and instead serve to marginalise further the very people they seek to help.

New research from the University of Edinburgh Business School, Lancaster University Management School and Dublin City University Business School, published in the Journal of Economic Geography, found the networks are unable to overcome bigger societal issues that prevent more women from pursuing their own businesses.

Policy makers see the drive to increase female entrepreneurship as key to helping foster national and regional economic growth. However, women lag behind men in terms of business ownership, growth and access to resources.

The research, carried out in Northern Ireland, a region where female entrepreneurship is low in comparison to the rest of the UK, looked at efforts by regional development agency Invest NI to address the issues.

Regional economic policy has focused on stimulating and supporting women's entrepreneurship through the establishment of formal women-only networks to provide support, role models and access to networks.

The researchers spoke with members and managers of women-only business networks, which have been at the heart of policies in Northern Ireland for nearly two decades, as well as members of mixed networks, and of both.

Policy-makers justify the promotion of women-only networks as providing network opportunities to support women's entrepreneurship and, as a result, boost the economy, but the research, supported by British Academy funding, shows a disconnect between intent and actual impact, as the networks perpetuate women's marginalisation and place them in a niche rather them empowering and encouraging them.

"Entrepreneurship policies targeted at women are contributing little or nothing to their equality, well-being or independence," said co-author Professor Richard Harrison, of the University of Edinburgh. "The outcomes of policy are often limited or contrary to intentions.

"Entrepreneurship is shaped for men, and successful entrepreneurs are male. Women are only deemed successful if they launch businesses in the 'right' (male-dominated) industries and match male-owned businesses for growth. Thus, women-only networks perpetuate the masculinity of entrepreneurship, by reinforcing women as being in the margins."

The research shows policy design ignores inherent structural issues within society and entrepreneurship, where there is still a clear and continuing division of labour between 'men's work' and 'women's work'.

The researchers found that there is a lack of knowledge and information around the sectors women entrepreneurs tend to predominate in. This leads to a shortfall in well-connected and credible contacts and role models to provide information or introductions to suppliers or gatekeepers.

The networks tend to be more geographically restricted and focus more on social support over business development, failing to provide a platform to address issues of gender inequality in entrepreneurship.

The interviews revealed a perception among the network members of having to battle against a male-dominated society, where they had to overcome stereotypes of women as mothers or homemakers, which can affect entrepreneurship being seen as a viable option.

"Strategies and policies focus on addressing failings or limitations unique to women, rather than on systemic, industry or institutional issues, perceiving a deficiency of perceived female underperformance," said co-author Professor Maura McAdam, of Dublin City University.

"By treating women differently to men, treating them a problem that needs to be fixed, and by creating women-only targeted initiatives, women continue to be marginalised. Many business structures are shaped for men, with women restricted in their entrepreneurial ambitions in the lower echelons of the retails and service sector, often referred to as 'pink ghettos'.

"The network managers saw themselves as empowering women, but this was not a sentiment shared by the women entrepreneurs, with the networks instead tending to reaffirm women's secondary place in society and business. The members found it difficult to see themselves as entrepreneurs, undermining their ability and underselling themselves."

The researchers say more needs to be done to combat wider issues around male dominance if female entrepreneurship is to grow.

"Women-only networks have not empowered women entrepreneurs," said co-author Professor Claire Leitch, of Lancaster University. "They do not have the power to overcome issues of male dominance in the area, and it is not a given that other policies would have that ability to achieve the goals of increasing women's entrepreneurial activity, well-being and financial independence either.

"Supporting women-only networks merely pays lip service to women's unequal position and power without addressing the structural issues and inequalities at the heart of the issue. These networks reinforce the masculinity of entrepreneurship and, unfortunately, there is no quick fix for policy design in this area.

"All parties need to identify, address and eliminate the various means by which cultural bias is perpetuated, restructuring the ways social institutions are conceived. If women's entrepreneurship continues to be seen as a gendered niche, aspirations for its impact will never be met."

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Lancaster University

Researchers uncover two-drug combo that halts the growth of cancer cells

image: Dhivya Sudhan, Ph.D., (left) and Carlos L. Arteaga, M.D.

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UTSW

DALLAS - Jan. 23, 2020 - UT Southwestern Simmons Cancer Center researchers have discovered a two-drug combo that halts the growth of cancer cells that carry HER2 mutations.

The findings, published today in the journal Cancer Cell, were prompted by the observation that, after an initial response, patients with cancers harboring HER2 mutations eventually develop resistance to a promising new cancer drug currently in clinical trials.

The scientists found that another drug, already on the market, counters that resistance and blocks the cancer, thereby providing the basis for a novel drug combination against cancers with mutations in the HER2 gene.

Dhivya Sudhan, Ph.D., a postdoctoral research fellow in the Harold C. Simmons Comprehensive Cancer Center, and collaborators evaluated data from a molecularly guided trial where patients with tumors with HER2 mutations were treated with the HER2 inhibitor neratinib. In this study, patients' cancers were sequenced as the disease progressed during treatment. Based on this analysis, Sudhan discovered in the laboratory that an effective way to offset eventual resistance to neratinib is with everolimus, a TORC1 inhibitor commonly used to treat other types of breast cancer.

"This finding may give clinicians an effective response to neratinib resistance. That could make a real difference for patients with breast, ovarian, lung, and other cancers harboring HER2 mutations," says Carlos L. Arteaga, M.D., Director of the Simmons Cancer Center at UT Southwestern and corresponding author of the study.

HER2 mutations have long been identified as a key driver in breast and other cancers. The authors of this study zeroed in on a signaling network driven by TORC1, which they showed is the pathway through which HER2-mutant cancers become neratinib-resistant.

"We consistently noted activation of TORC1 signaling as a mechanism of resistance to neratinib across different types of HER2-mutant cancers. Different cancer types used different strategies to escape neratinib, but they all converged on TORC1 signaling," Sudhan says.

In addition to studying tumor sequencing data from HER2-mutant cancer patients across the country who are in clinical trials for neratinib, Sudhan also studied neratinib-resistant cells and tumors that continue to live and grow in the laboratory.

The sequencing of the patients' cancer before and during the clinical trial showed that some patients already had a mutation that could activate the TORC1 pathway. Others would develop it eventually, but they could benefit from everolimus which is currently used as a TORC1 inhibitor to address the other roles TORC1 plays in cancer. Everolimus would allow the patient to continue benefiting from neratinib's inhibition of HER2.

Sudhan says the combination of neratinib and everolimus worked in cell lines, organoids established from patient-derived tumors, and in mice harboring HER2 mutant tumors. The next step will be testing this two-drug combo in humans.

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UT Southwestern Medical Center

A new blood component revealed

Mitochondria are organelles that are found in the eukaryotic cells. A place of cellular respiration, they are the cells' "batteries" and play a major role in energy metabolism and intercellular communication. Their particularity is to possess their own genome, transmitted solely by the mother and separate from the DNA contained in the nucleus. The mitochondria can sometimes be observed outside the cells in the form of fragments encapsulated within microvesicles. Under certain very specific conditions the platelets are also capable of releasing intact mitochondria into the extracellular space.

The work of a team led by Inserm researcher Alain R. Thierry at the Montpellier Cancer Research Institute (Inserm/Université de Montpellier/Montpellier Cancer Institute) has now revolutionized knowledge of this organelle by revealing that whole functioning extracellular mitochondria are in fact found in the bloodstream.

The researchers used previous findings which showed that the plasma of a healthy individual contains up to 50,000 times more mitochondrial DNA than nuclear DNA. They hypothesized that for it to be detectable and quantifiable in the blood in this manner, the mitochondrial DNA had to be protected by a structure of sufficient stability. In order to identify such a structure, plasma samples from around 100 individuals were analyzed.

This analysis revealed the presence in the blood circulation of highly stable structures containing whole mitochondrial genomes. Following examination of their size and density, as well as the integrity of their mitochondrial DNA, these structures observed using electron microscopy (up to 3.7 million per ml of plasma) were revealed to be intact and functional mitochondria.

Throughout the seven-year research period, the scientists used as many technical and methodological approaches as possible to validate this presence of circulating extracellular mitochondria in the blood.

"When we consider the sheer number of extracellular mitochondria found in the blood, we have to ask why such a discovery had not been made before, Thierry says. Our team has built up expertise in the specific and sensitive detection of DNA in the blood, by working on the fragmentation of extracellular DNA derived from the mitochondria in particular", he adds.

But what is the role of these extracellular mitochondria? The answer to that could be linked to the structure of the mitochondrial DNA, similar to that of bacterial DNA, which gives it the ability to induce immune and inflammatory responses. Based on this observation, the researchers hypothesize that these circulating mitochondria could be implicated in many physiological and/or pathological processes requiring communication between the cells (such as the mechanisms of inflammation). Indeed, recent studies have demonstrated the ability of certain cells to transfer mitochondria between themselves, such as the stem cells with damaged cells. "The extracellular mitochondria could perform various tasks as messenger for the entire body", Thierry explains.

In addition to its importance to our knowledge of physiology, this discovery could lead to improvements in the diagnosis, monitoring and treatment of certain diseases. In fact, the research team is now devoting its attention to evaluating the extracellular mitochondria as biomarkers in non-invasive prenatal diagnosis and cancer.

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INSERM (Institut national de la santé et de la recherche médicale)

Racial discrimination in mortgage market persistent over last four decades

image: Housing discrimination leads to persistent neighborhood segregation.

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Northwestern University

Black and Hispanic borrowers more likely to be rejected when they apply for a loan; more likely to receive a high-cost mortgage

Housing discrimination leads to persistent neighborhood segregation

Discrimination in mortgage market makes it more difficult for minority households to build wealth through housing

EVANSTON, Ill. --- A new Northwestern University analysis finds that racial disparities in the mortgage market suggest that discrimination in loan denial and cost has not declined much over the previous 30 to 40 years, yet discrimination in the housing market has decreased during the same time period.

Northwestern researchers examined how discrimination in housing and mortgage lending against blacks, Latinos and Asians has changed over the last 40 years by performing a meta-analysis of existing studies since the late 1970s to the present.

"We find declines in most forms of discrimination, especially the more extreme forms like falsely claiming an advertised unit is no longer available," said Lincoln Quillian, lead author of the study and professor of sociology in the Weinberg College of Arts and Sciences at Northwestern. "There is less reduction and considerable persisting discrimination in more subtle differences in treatment between whites and minorities.

"For example, in about 10% audits in which a white and an African-American auditor were sent to apply for the same unit after 2005, the white auditor was recommended more units than the African-American auditor. These trends hold in both the large HUD (Housing and Urban Development)-sponsored housing audits, which others have examined with similar findings to us, and in smaller correspondence studies."

In the mortgage market the researchers found that racial gaps in loan denial have declined only slightly, and racial gaps in mortgage cost have not declined at all, suggesting persistent racial discrimination. Black and Hispanic borrowers are more likely to be rejected when they apply for a loan and are more likely to receive a high-cost mortgage.

"It was distressing to find no evidence of reduced discrimination in the mortgage market over the last 35 years," said Quillian, also a faculty fellow with the University's Institute for Policy Research. "Discrimination in the mortgage market makes it more difficult for minority households to build wealth through housing, contributing to racial wealth gaps. Discrimination in the housing market increases housing insecurity for minority households and contributes to persistent neighborhood segregation. These results help account for why black homeownership has not increased over the last 35 years."

The reduction in the most exclusionary forms of housing discrimination suggests that in most cases discrimination will not block persistent efforts by black or Hispanic households to move into white or affluent neighborhoods.

"We believe that more subtle forms of discrimination will steer households with weaker neighborhood preferences toward own-race neighborhoods, helping to maintain residential segregation," Quillian said.

In sum, the researchers say, the results suggest that anti-discrimination enforcement in the housing and mortgage markets should continue, and efforts should be increased to ensure that all home seekers receive equal treatment regardless of their race or ethnic background.

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Northwestern University

Older refugees have high levels of depression even decades after immigration to Canada

Most research on the mental health of refugees focuses on the first few years after resettlement in the host country, but little is known about their long-term mental health.

A new study of Canadians aged 45-85, released this week, found that refugees were 70% more likely to suffer from depression than those born in Canada when age, sex and marital status were taken into account -- even decades after immigration.

"Our findings indicate that the refugee experience casts a long shadow across an individual's lifespan," says the study's first author Shen (Lamson) Lin, a doctoral student at the University of Toronto's Factor Inwentash Faculty of Social Work (FIFSW).

"While our data did not capture reasons for the high levels of depression among refugees, we believe it may be influenced by exposure to pre-migration traumas such as genocide, forced displacement, human trafficking, sexual assault, famine, and separation from family."

In order to untangle the potential contribution of post-migration challenges, which face all immigrants, from the pre-migration trauma unique to refugees, the research team also investigated depression among immigrants who did not arrive as refugees. Post-migration problems may include downward socioeconomic mobility, racial discrimination, higher levels of unemployment, language barriers, and reduced social networks.

The prevalence of depression among non-refugee immigrants (16.6%) was much closer to that of their Canadian-born peers (15.2%) than to that of refugees (22.1%).

"Our results suggest that post-migration challenges are less important than pre-migration traumas when it comes to depression," says senior author, FIFSW Professor Esme Fuller-Thomson, who is also cross-appointed to U of T's Department of Family & Community Medicine and is is director of the University's Institute for Life Course & Aging.

"The greater prevalence of depression among refugees -- half of whom arrived more than four decades ago -- underlines the importance of providing mental health resources for our refugee community both immediately after arrival, but also in the ensuing decades."

The study investigated factors that may have influenced levels of depression among participants, including age, sex, marital status, income, education, health, chronic pain, health behaviors and the frequency of social contacts. But even when these characteristics were accounted for, refugees still had much higher odds of depression than individuals born in Canada.

The researchers found that social support is a key. A lack of social support was associated with higher levels of depression among refugees -- they were also more likely to have less of it. Refugees were more likely than those born in Canada to report that they lacked: 1) someone who showed them love and affection (17% versus 8%), 2) someone to confide in about their problems (27% vs 16%), and 3) someone to give them good advice about a crisis (27% versus 16%). (The level of social support among immigrants who did not arrive as refugees was relatively similar to the Canadian born group, and much less vulnerable than the refugee group.) When the availability of these three levels of social support was high, the relationship between refugee status and depression significantly diminished.

"Our study indicates that the quality of relationships, rather than the quantity of social connections, matters most for refugees' mental health." says co-author Karen Kobayashi, a professor in the Department of Sociology and a research affiliate at the Institute on Aging & Lifelong Health at the University of Victoria. "This highlights the importance of investigating ways to promote powerful positive social relations among refugees and asylum seekers in their families, neighbourhoods, and communities."

The study's findings also have important policy implications.

In Canada, two different sponsorship programs are currently in place. Government-assisted refugees (GARs) get basic financial aid and assistance offered by professionals to help with the settlement process. Privately sponsored refugees (PSRs) are supported by a network of engaged volunteers, often members of a church, mosque or synagogue who are able to provide extensive assistance with all kinds of settlement issues including housing, health needs and job searches.

According to recent studies on Syrian refugees in Canada, PSRs report having more help in daily errands, fewer unmet needs and a higher employment rate than GARs.

"We anticipate that refugees sponsored under the PSR program may be more likely to thrive post-migration because of a stronger social support network and this may set them on a positive employment and mental health trajectory for decades after their arrival." says co-author Hongmei Tong, Assistant Professor of Social Work at MacEwan University in Edmonton.

Consistent with earlier studies, Canadian adults in this study who were poor, experiencing chronic pain and those with more co-morbid health conditions had a higher prevalence of depression.

"It is not surprising that Canadians who have household incomes under $25,000 per year have double the odds of distress compared to those with incomes above $75,000. Struggling to pay the rent and feed one's family can be extremely distressing," said co-author Simran R Arora, Master of Social Work student at the University of Toronto.

"Mental health professionals must be careful not to neglect physical health concerns such as chronic pain," said co-author Karen Davison, Health Science Program Chair at Kwantlen Polytechnic University in Surrey, B.C. "We really need to be treating the whole person in order to address depression."

Credit: 
University of Toronto

New insights about the brightest explosions in the Universe

image: The supernova SN 2006gy

Image: 
Fox et al 2015

Swedish and Japanese researchers have, after ten years, found an explanation to the peculiar emission lines seen in one of the brightest supernovae ever observed - SN 2006gy. At the same time they found an explanation for how the supernova arose.

Superluminous supernovae are the most luminous explosions in cosmos. SN 2006gy is one of the most studied such events, but researchers have been uncertain about its origin. Astrophysicists at Stockholm University have, together with Japanese colleagues, now discovered large amounts of iron in the supernova through spectral lines that have never previously been seen either in supernovae or in other astrophysical objects. That has led to a new explanation for how the supernova arose.

"No-one had tested to compare spectra from neutral iron, i.e. iron which all electrons retained, with the unidentified emission lines in SN 2006gy, because iron is normally ionized (one or more electrons removed). We tried it and saw with excitement how line after line lined up just as in the observed spectrum", says Anders Jerkstrand, Department of Astronomy, Stockholm University.

"It became even more exciting when it quickly turned out that very large amounts of iron was needed to make the lines - at least a third of the Sun's mass - which directly ruled out some old scenarios and instead revealed a new one."

The progenitor to SN 2006gy was, according to the new model, a double star consisting of a white dwarf of the same size as the Earth and a hydrogen-rich massive star as large as our solar system in close orbit. As the hydrogen rich star expanded its envelope, which happens when new fuel is ignited in the late stages of evolution, the white dwarf was caught in the envelope and spiralled in towards the centre of the companion. When it reached the centre the unstable white dwarf exploded and a so-called Type Ia supernova was born. This supernova then collided with the ejected envelope, which is flung out during the inspiral, and this gigantic collision gave rise to the light of SN 2006gy.

"That a Type Ia supernova appears to be behind SN 2006gy turns upside down what most researchers have believed", says Anders Jerkstrand.

"That a white dwarf can be in close orbit with a massive hydrogen-rich star, and quickly explode upon falling to the centre, gives important new information for the theory of double star evolution and the conditions necessary for a white dwarf to explode."

Fact: Superluminous supernovae

Superluminous supernovae are the brightest explosions in the Universe. Over a few months they radiate as much energy as the Sun does over its whole lifetime and reach a peak brightness as high as that of an entire galaxy. The origin of this energy, and what kind of star system that has exploded, are still unclear and debated.

Fact: Emission line

An emission line is a bright feature in the spectrum of a light source. The lines arise as each element in the source emit light at specific wavelengths, and from this one can see which elements are present in the source. Examples of emission line sources are certain astrophysical objects.

Credit: 
Stockholm University

New experimental vaccine for African swine fever virus shows promise

Washington, DC - January 23, 2020 - Government and academic investigators have developed a vaccine against African swine fever that appears to be far more effective than previously developed vaccines. The research appears this week in the Journal of Virology, a publication of the American Society for Microbiology.

Currently, there is no commercially available vaccine against African swine fever, which has been devastating the swine industry in Eastern Europe and Southeast Asia. African swine fever virus (ASFV) is highly contagious and often lethal to domestic and wild pigs. Outbreaks have been quelled--more or less--"by animal quarantine and slaughter," according to the report. (Humans are not susceptible to ASFV.)

In the study, both low and high doses of the vaccine were 100% effective against the virus when the pigs were challenged 28 days post-inoculation.

The research was motivated by the 2007 outbreak of African swine fever in the Republic of Georgia, said principal investigator Douglas P. Gladue, PhD, Senior Scientist, Plum Island Animal Disease Center, Agricultural Research Service, US Department of Agriculture. "This was the first outbreak in recent history outside of Africa and Sardinia--where swine fever is endemic--and this particular strain has been highly lethal and highly contagious, spreading quickly to neighboring countries." This is also a new strain of the virus, now known as ASFV-G (the G stands for Georgia).

The 2007 outbreak was also the genesis of the African swine fever that has been spreading through Eastern Europe and east Asia, said Manuel V. Borca, PhD, also a Senior Scientist at the Plum Island Animal Disease Center.

There is limited cross-protection between strains of African swine fever, likely because the antigens and degree of virulence differ among them, and none of the historical experimental vaccines have been shown to be effective against ASFV-G, said Dr. Gladue.

So the investigators at Plum Island Animal Disease Center set out to develop a vaccine. Part of the process of developing whole virus vaccines involves deleting virulence genes from the virus. But when the researchers deleted genes similar to those that had been deleted in older ASFV strains to attenuate them, "it became clear that ASFV-G was much more virulent" than the other, historical isolates, because it retained a higher level of virulence, said Dr. Gladue. The investigators then realized they needed a different genetic target in order to attenuate ASFV-G.

They used a predictive methodology called a computational pipeline to predict the roles of proteins on the virus. The computational pipeline predicted that a protein called I177l could interfere with the immune system of the pig. When they deleted this gene, ASFV-G was completely attenuated.

More work needs to be done to meet regulatory requirements for commercialization, said Dr. Gladue. But "This new experimental ASFV vaccine shows promise, and offers complete protection against the current strain currently producing outbreaks throughout Eastern Europe and Asia."

Credit: 
American Society for Microbiology

Keeping guns away from potential mass shooters

image: Criminals with misdemeanor domestic violence charges are banned from purchasing firearms for life -- yet some of them do.

Image: 
Photo by Derwin Edwards from Pexels

EAST LANSING, Mich. - The United States currently averages 20 mass shootings per year. Researchers from Michigan State University measured the extent to which mass shootings are committed by domestic violence perpetrators, suggesting how firearm restrictions may prevent these tragedies.

Under federal law, when people are convicted of domestic violence misdemeanor crimes, they are prohibited from purchasing and possessing guns for the rest of their lives. However, holes in the system allow potential mass shooters to slip through the cracks.

"We found that 38% of known mass shooters had a history of domestic violence, either known to the justice system or mentioned in the media," said April Zeoli, associate professor of criminal justice at MSU and lead author of the research. "Very few of those who committed mass shootings seemed to have firearm restrictions due to domestic violence; the fact that some of them had those restrictions suggests that we are not actually preventing purchase or possession of a gun as well as we could or need to be."

Zeoli explained that some cases of domestic violence never result in firearm restrictions because law enforcement is never involved, because the cases were not referred to prosecutors, because the charges that were filed didn't qualify for firearm restrictions or because the case didn't meet a relationship requirement for the gun restrictions to be applied.

"In more than 20 states, a person convicted of misdemeanor domestic violence against a dating partner will not be restricted from firearm access - you must have lived together, be married or have a child together to qualify for the restriction," Zeoli said.

The research, published in Criminology & Public Policy, looked at the nearly 90 mass shootings that took place between 2014 and 2017. Zeoli and co-author Jennifer Paruk cross-checked four separate mass shooting databases - compiled by Every Town for Gun Safety, USA Today, Gun Violence Archives and Mother Jones - and then used publicly available criminal records to see what other criminal charges the shooters had against them.

"The public sees media reports of mass shootings happening in movie theaters, schools, night clubs and beyond - these are the ones that keep us all up at night," Zeoli said. "But the majority of these mass shootings involved intimate and family member victims."

The researchers pinpointed ways - called "exit points" in the paper - that firearm restrictions failed to prevent a shooter from buying a gun, which include purchases made through private sales and a failure to report gun disqualifications to the criminal background check system.

"In the case of the Sutherland Springs Baptist church shooting, the shooter did in fact qualify for a gun restriction under federal law because of domestic violence," Zeoli said. "However, the conviction was in military court, and the military never sent the conviction records to the background check system; so, when he went to buy a gun, nothing showed up on his record."

Zeoli hopes that the findings inspire both the public and lawmakers to learn about their states' laws, as well as the exit points she and Paruk found that can lead to a gun landing in the hands of the wrong type of person.

"The image you get of mass shootings in the media isn't always the full picture," Zeoli said. "People should determine, in their state, whether it may be possible for people convicted of domestic violence to obtain a firearm. Many of those exit points can be closed through legislation and better implementation of the law. My feeling - and my hope - is that we'll continue to see states work to implement restrictions to dangerous individuals from gaining access to guns and prevent gun violence from happening."

Credit: 
Michigan State University

ICUs receive higher satisfaction scores for end-of-life care than other hospital units

Family caregivers of the deceased rated the quality of end-of-life care in the intensive care unit (ICU) higher than the end-of-life care in other hospital departments (also called wards), according to new, large Penn Medicine study in the American Journal of Respiratory and Critical Care Medicine. The research challenges a common belief that dying in the ICU is a less favorable experience than dying elsewhere in the hospital.

The findings don't suggest that more dying patients should be moved to the ICU, rather that more efforts should be made to learn about the elements in the ICU that potentially improve end-of-care experiences, such as higher staffing ratios. These lessons could then be applied to other clinical settings.

What's more, ICU use - often associated with unfavorable end-of-life experiences by clinicians, researchers, and policymakers - may not be an appropriate measure of poor quality end-of-life care.

"It has been assumed that dying in an ICU is even worse than a ward because it's more expensive and more intensive. But that has been never been based on any sound evidence - it's just based on traditional ways of looking at the problem," said senior author Scott D. Halpern, MD, PhD, a critical care physician and professor of Medicine, Epidemiology, and Medical Ethics and Health Policy in Penn's Perelman School of Medicine, and director of the Palliative and Advanced Illness Research (PAIR) Center. "So, we wanted to better understand the difference in the care. Are the doctors getting it right? Are the researchers getting it right? Are policymakers getting it right? Turns out, none of those parties were getting it right."

The study analyzed clinical data and bereavement surveys from the family members of more than 28,000 patients who died in 106 Veterans Administration (VA) acute-care hospitals between 2010 and 2016 in and outside the ICU, including those who experienced care in both.

Compared with ward-based care, the researchers found ICU care was associated with higher ratings by family caregivers of overall care, pain management, clinician-family communication, emotional support, and spiritual support during patients' final 30 days.

Reducing ICU use has been a longstanding research and policy objective. In many surveys, ICU care has received lower ratings for cancer patients, likely because they underwent aggressive treatments. Driven by this and other factors, researchers have used ICU deaths as an outcome measure in their studies, with the idea that lower rates of ICU death represent better end-of-life care. Policymakers have also clung to this notion, with some pushing for ICU utilization as a measure of low-quality care - a move that could adversely affect hospital patient and safety scores. However, few studies exist to support this view.

To better understand the quality of end-of-life care inside and outside the ICU, Penn Medicine researchers analyzed patient and hospitalization characteristics from VA records and results from the Bereaved Family Survey, which are distributed to family members or close contacts of every veteran who dies in a VA acute care hospital or other VA institutional setting.

The study found that "ICU-only care" was associated with more frequent optimal ratings than "no ICU care," including overall excellent care (56.6 percent vs. 48.1 percent), care consistent with preferences (78.7 percent vs. 72.4 percent), and having pain controlled (51.3 percent vs. 46.7 percent).

Among patients with mixed care, increasing ICU time was associated with higher ratings on these same measures.

"Instead of just looking at people who got all of their care in the ICU and people who did not, we looked at all people in the hospital," Halpern said. "That actually provides the most compelling evidence that ICU care is associated with better end-of-life quality because we found that the greater the proportion of time spent in the ICU, the higher the quality of end-of-life care. It was a classic 'dose-response' relationship."

The higher ratings may be explained by the more favorable staffing ratios in the ICU and other features that can improve symptom management and other facets of care. ICUs have been the focus of significant research and guidelines on end-of-life care, so greater experience among clinicians and nurses may translate into improved communication and symptom management. And family members of patients receiving ICU care may take solace in knowing that all reasonable efforts to extend life were attempted - which may affect their ratings.

"The implication is that we should work to improve end-of-life care in acute care settings like hospital wards. And because moving people from ICUs to wards may not be a good strategy to improve their end-of-life experience, we need to focus instead on getting people out the hospital entirely for end of life care when feasible," said first author Joshua A. Rolnick, MD, a physician in Penn's division of General Internal Medicine and at the Philadelphia VA Medical Center.

A noteworthy secondary finding was the high rate of uncontrolled pain among patients: more than 50 percent. This finding is consistent with prior work suggesting high unmet needs for symptom management near the end of life that deserves further study and attention.

According to the researchers, further studies are warranted to not only better understand how factors in ICU may improve end-of-life care outside the ICU in the hospital, but also assisted-care settings, including home hospice care, and to help reduce overall hospitalizations.

Credit: 
University of Pennsylvania School of Medicine